Genome-wide regulatory complexity in yeast promoters: Separation of functionally conserved and neutral sequence

von Chin, Chen-Shan, Chuang, Jeffrey H., Li, Hao
Veröffentlicht 2005

Genome-wide identification of the regulatory targets of a transcription factor using biochemical characterization and computational genomic analysis

von Jolly, Emmitt R, Chin, Chen-Shan, Herskowitz, Ira, Li, Hao
Veröffentlicht 2005

Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing

von Sevim, Volkan, Bashir, Ali, Chin, Chen-Shan, Miga, Karen H.
Veröffentlicht in Bioinformatics (2016)

Ribbon: intuitive visualization for complex genomic variation

von Nattestad, Maria, Aboukhalil, Robert, Chin, Chen-Shan, Schatz, Michael C
Veröffentlicht in Bioinformatics (2020)

Scaffolding of long read assemblies using long range contact information

von Ghurye, Jay, Pop, Mihai, Koren, Sergey, Bickhart, Derek, Chin, Chen-Shan
Veröffentlicht in BMC Genomics (2017)

Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway

von Samanta, Manoj Pratim, Tongprasit, Waraporn, Sethi, Himanshu, Chin, Chen-Shan, Stolc, Viktor
Veröffentlicht 2006

Dynamics and Design Principles of a Basic Regulatory Architecture Controlling Metabolic Pathways

von Chin, Chen-Shan, Chubukov, Victor, Jolly, Emmitt R, DeRisi, Joe, Li, Hao
Veröffentlicht 2008

A flexible and efficient template format for circular consensus sequencing and SNP detection

von Travers, Kevin J., Chin, Chen-Shan, Rank, David R., Eid, John S., Turner, Stephen W.
Veröffentlicht 2010

A draft reference assembly of the Psilocybe cubensis genome

von McKernan, Kevin, Kane, Liam T., Crawford, Seth, Chin, Chen-Shan, Trippe, Aaron, McLaughlin, Stephen
Veröffentlicht in F1000Res (2021)

Gene expression patterns during adaptation of a helminth parasite to different environmental niches

von Jolly, Emmitt R, Chin, Chen-Shan, Miller, Steve, Bahgat, Mahmoud M, Lim, KC, DeRisi, Joseph, McKerrow, James H
Veröffentlicht 2007

De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads

von Korlach, Jonas, Gedman, Gregory, Kingan, Sarah B., Chin, Chen-Shan, Howard, Jason T., Audet, Jean-Nicolas, Cantin, Lindsey, Jarvis, Erich D.
Veröffentlicht in Gigascience (2017)

Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity

von Höijer, Ida, Johansson, Josefin, Gudmundsson, Sanna, Chin, Chen-Shan, Bunikis, Ignas, Häggqvist, Susana, Emmanouilidou, Anastasia, Wilbe, Maria, den Hoed, Marcel, Bondeson, Marie-Louise, Feuk, Lars, Gyllensten, Ulf, Ameur, Adam
Veröffentlicht in Genome Biol (2020)

HLA Typing for the Next Generation

von Mayor, Neema P., Robinson, James, McWhinnie, Alasdair J. M., Ranade, Swati, Eng, Kevin, Midwinter, William, Bultitude, Will P., Chin, Chen-Shan, Bowman, Brett, Marks, Patrick, Braund, Henny, Madrigal, J. Alejandro, Latham, Katy, Marsh, Steven G. E.
Veröffentlicht in PLoS One (2015)

Extending reference assembly models

von Church, Deanna M, Schneider, Valerie A, Steinberg, Karyn Meltz, Schatz, Michael C, Quinlan, Aaron R, Chin, Chen-Shan, Kitts, Paul A, Aken, Bronwen, Marth, Gabor T, Hoffman, Michael M, Herrero, Javier, Mendoza, M Lisandra Zepeda, Durbin, Richard, Flicek, Paul
Veröffentlicht in Genome Biol (2015)

Heterogeneous resistance to quizartinib in acute myeloid leukemia revealed by single-cell analysis

von Smith, Catherine C., Paguirigan, Amy, Jeschke, Grace R., Lin, Kimberly C., Massi, Evan, Tarver, Theodore, Chin, Chen-Shan, Asthana, Saurabh, Olshen, Adam, Travers, Kevin J., Wang, Susana, Levis, Mark J., Perl, Alexander E., Radich, Jerald P., Shah, Neil P.
Veröffentlicht in Blood (2017)

Validation of ITD mutations in FLT3 as a therapeutic target in human acute myeloid leukaemia

von Smith, Catherine C., Wang, Qi, Chin, Chen-Shan, Salerno, Sara, Damon, Lauren E., Levis, Mark J., Perl, Alexander E., Travers, Kevin J., Wang, Susana, Hunt, Jeremy P., Zarrinkar, Patrick P., Schadt, Eric E., Kasarskis, Andrew, Kuriyan, John, Shah, Neil P.
Veröffentlicht 2012

Fully Assembled Genome Sequence for Salmonella enterica subsp. enterica Serovar Javiana CFSAN001992

von Allard, Marc W., Muruvanda, Tim, Strain, Errol, Timme, Ruth, Luo, Yan, Wang, Charles, Keys, Christine E., Payne, Justin, Cooper, Tony, Luong, Khai, Song, Yi, Chin, Chen-Shan, Korlach, Jonas, Roberts, Rich J., Evans, Peter, Musser, Steven M., Brown, Eric W.
Veröffentlicht 2013

Fully Assembled Genome Sequence for Salmonella enterica subsp. enterica Serovar Javiana CFSAN001992

von Allard, Marc W., Muruvanda, Tim, Strain, Errol, Timme, Ruth, Luo, Yan, Wang, Charles, Keys, Christine E., Payne, Justin, Cooper, Tony, Luong, Khai, Song, Yi, Chin, Chen-Shan, Korlach, Jonas, Roberts, Richard J., Evans, Peter, Musser, Steven M., Brown, Eric W.
Veröffentlicht 2014

Long-read, whole-genome shotgun sequence data for five model organisms

von Kim, Kristi E, Peluso, Paul, Babayan, Primo, Yeadon, P. Jane, Yu, Charles, Fisher, William W, Chin, Chen-Shan, Rapicavoli, Nicole A, Rank, David R, Li, Joachim, Catcheside, David E. A, Celniker, Susan E, Phillippy, Adam M, Bergman, Casey M, Landolin, Jane M
Veröffentlicht in Sci Data (2014)

Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

von Chin, Chen-Shan, Peluso, Paul, Sedlazeck, Fritz J., Nattestad, Maria, Concepcion, Gregory T., Clum, Alicia, Dunn, Christopher, O’Malley, Ronan, Figueroa-Balderas, Rosa, Morales-Cruz, Abraham, Cramer, Grant R., Delledonne, Massimo, Luo, Chongyuan, Ecker, Joseph R., Cantu, Dario, Rank, David R., Schatz, Michael C.
Veröffentlicht in Nat Methods (2016)