Plant noncoding RNA gene discovery by “single-genome comparative genomics”

by Chen, Chong-Jian, Zhou, Hui, Chen, Yue-Qin, Qu, Liang-Hu, Gautheret, Daniel
Published 2011

Genomewide Analysis of Box C/D and Box H/ACA snoRNAs in Chlamydomonas reinhardtii Reveals an Extensive Organization Into Intronic Gene Clusters

by Chen, Chun-Long, Chen, Chong-Jian, Vallon, Olivier, Huang, Zhan-Peng, Zhou, Hui, Qu, Liang-Hu
Published 2008

HiTC: exploration of high-throughput ‘C’ experiments

by Servant, Nicolas, Lajoie, Bryan R., Nora, Elphège P., Giorgetti, Luca, Chen, Chong-Jian, Heard, Edith, Dekker, Job, Barillot, Emmanuel
Published 2012

RNAi-Dependent and Independent Control of LINE1 Accumulation and Mobility in Mouse Embryonic Stem Cells

by Ciaudo, Constance, Jay, Florence, Okamoto, Ikuhiro, Chen, Chong-Jian, Sarazin, Alexis, Servant, Nicolas, Barillot, Emmanuel, Heard, Edith, Voinnet, Olivier
Published 2013

Correction: RNAi-Dependent and Independent Control of LINE1 Accumulation and Mobility in Mouse Embryonic Stem Cells

by Ciaudo, Constance, Jay, Florence, Okamoto, Ikuhiro, Chen, Chong-Jian, Sarazin, Alexis, Servant, Nicolas, Barillot, Emmanuel, Heard, Edith, Voinnet, Olivier
Published in PLoS Genet (2015)

Retraction: RNAi-Dependent and Independent Control of LINE1 Accumulation and Mobility in Mouse Embryonic Stem Cells

by Ciaudo, Constance, Jay, Florence, Okamoto, Ikuhiro, Chen, Chong-Jian, Sarazin, Alexis, Servant, Nicolas, Barillot, Emmanuel, Heard, Edith, Voinnet, Olivier
Published in PLoS Genet (2015)

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

by Servant, Nicolas, Varoquaux, Nelle, Lajoie, Bryan R., Viara, Eric, Chen, Chong-Jian, Vert, Jean-Philippe, Heard, Edith, Dekker, Job, Barillot, Emmanuel
Published in Genome Biol (2015)

Structural organization of the inactive X chromosome in the mouse

by Giorgetti, Luca, Lajoie, Bryan R., Carter, Ava C., Attia, Mikael, Zhan, Ye, Xu, Jin, Chen, Chong Jian, Kaplan, Noam, Chang, Howard Y., Heard, Edith, Dekker, Job
Published in Nature (2016)

Maternal LSD1/KDM1A is an essential regulator of chromatin and transcription landscapes during zygotic genome activation

by Ancelin, Katia, Syx, Laurène, Borensztein, Maud, Ranisavljevic, Noémie, Vassilev, Ivaylo, Briseño-Roa, Luis, Liu, Tao, Metzger, Eric, Servant, Nicolas, Barillot, Emmanuel, Chen, Chong-Jian, Schüle, Roland, Heard, Edith
Published in eLife (2016)

Xist-dependent imprinted X inactivation and the early developmental consequences of its failure

by Borensztein, Maud, Syx, Laurène, Ancelin, Katia, Diabangouaya, Patricia, Picard, Christel, Liu, Tao, Liang, Jun-Bin, Vassilev, Ivaylo, Galupa, Rafael, Servant, Nicolas, Barillot, Emmanuel, Surani, Azim, Chen, Chong-Jian, Heard, Edith
Published in Nat Struct Mol Biol (2017)

Kinetics of Xist-induced gene silencing can be predicted from combinations of epigenetic and genomic features

by Barros de Andrade e Sousa, Lisa, Jonkers, Iris, Syx, Laurène, Dunkel, Ilona, Chaumeil, Julie, Picard, Christel, Foret, Benjamin, Chen, Chong-Jian, Lis, John T., Heard, Edith, Schulz, Edda G., Marsico, Annalisa
Published in Genome Res (2019)

Contribution of epigenetic landscapes and transcription factors to X-chromosome reactivation in the inner cell mass

by Borensztein, Maud, Okamoto, Ikuhiro, Syx, Laurène, Guilbaud, Guillaume, Picard, Christel, Ancelin, Katia, Galupa, Rafael, Diabangouaya, Patricia, Servant, Nicolas, Barillot, Emmanuel, Surani, Azim, Saitou, Mitinori, Chen, Chong-Jian, Anastassiadis, Konstantinos, Heard, Edith
Published in Nat Commun (2017)

Statistical Approach to Decreasing the Error Rate of Noninvasive Prenatal Aneuploid Detection caused by Maternal Copy Number Variation

by Zhang, Han, Zhao, Yang-Yu, Song, Jing, Zhu, Qi-Ying, Yang, Hua, Zheng, Mei-Ling, Xuan, Zhao-Ling, Wei, Yuan, Chen, Yang, Yuan, Peng-Bo, Yu, Yang, Li, Da-Wei, Liang, Jun-Bin, Fan, Ling, Chen, Chong-Jian, Qiao, Jie
Published in Sci Rep (2015)

Characteristics and prognostic significance of genetic mutations in acute myeloid leukemia based on a targeted next‐generation sequencing technique

by Wang, Rui‐Qi, Chen, Chong‐Jian, Jing, Yu, Qin, Jia‐Yue, Li, Yan, Chen, Guo‐Feng, Zhou, Wei, Li, Yong‐Hui, Wang, Juan, Li, Da‐Wei, Zhao, Hong‐Mei, Wang, Bian‐Hong, Wang, Li‐Li, Wang, Hong, Wang, Meng‐Zhen, Gao, Xiao‐Ning, Yu, Li
Published in Cancer Med (2020)

The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions

by Merchant, Sabeeha S., Prochnik, Simon E., Vallon, Olivier, Harris, Elizabeth H., Karpowicz, Steven J., Witman, George B., Terry, Astrid, Salamov, Asaf, Fritz-Laylin, Lillian K., Maréchal-Drouard, Laurence, Marshall, Wallace F., Qu, Liang-Hu, Nelson, David R., Sanderfoot, Anton A., Spalding, Martin H., Kapitonov, Vladimir V., Ren, Qinghu, Ferris, Patrick, Lindquist, Erika, Shapiro, Harris, Lucas, Susan M., Grimwood, Jane, Schmutz, Jeremy, Cardol, Pierre, Cerutti, Heriberto, Chanfreau, Guillaume, Chen, Chun-Long, Cognat, Valérie, Croft, Martin T., Dent, Rachel, Dutcher, Susan, Fernández, Emilio, Ferris, Patrick, Fukuzawa, Hideya, González-Ballester, David, González-Halphen, Diego, Hallmann, Armin, Hanikenne, Marc, Hippler, Michael, Inwood, William, Jabbari, Kamel, Kalanon, Ming, Kuras, Richard, Lefebvre, Paul A., Lemaire, Stéphane D., Lobanov, Alexey V., Lohr, Martin, Manuell, Andrea, Meier, Iris, Mets, Laurens, Mittag, Maria, Mittelmeier, Telsa, Moroney, James V., Moseley, Jeffrey, Napoli, Carolyn, Nedelcu, Aurora M., Niyogi, Krishna, Novoselov, Sergey V., Paulsen, Ian T., Pazour, Greg, Purton, Saul, Ral, Jean-Philippe, Riaño-Pachón, Diego Mauricio, Riekhof, Wayne, Rymarquis, Linda, Schroda, Michael, Stern, David, Umen, James, Willows, Robert, Wilson, Nedra, Zimmer, Sara Lana, Allmer, Jens, Balk, Janneke, Bisova, Katerina, Chen, Chong-Jian, Elias, Marek, Gendler, Karla, Hauser, Charles, Lamb, Mary Rose, Ledford, Heidi, Long, Joanne C., Minagawa, Jun, Page, M. Dudley, Pan, Junmin, Pootakham, Wirulda, Roje, Sanja, Rose, Annkatrin, Stahlberg, Eric, Terauchi, Aimee M., Yang, Pinfen, Ball, Steven, Bowler, Chris, Dieckmann, Carol L., Gladyshev, Vadim N., Green, Pamela, Jorgensen, Richard, Mayfield, Stephen, Mueller-Roeber, Bernd, Rajamani, Sathish, Sayre, Richard T., Brokstein, Peter, Dubchak, Inna, Goodstein, David, Hornick, Leila, Huang, Y. Wayne, Jhaveri, Jinal, Luo, Yigong, Martínez, Diego, Ngau, Wing Chi Abby, Otillar, Bobby, Poliakov, Alexander, Porter, Aaron, Szajkowski, Lukasz, Werner, Gregory, Zhou, Kemin, Grigoriev, Igor V., Rokhsar, Daniel S., Grossman, Arthur R.
Published 2007