HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

HiC-Pro is an optimized and flexible pipeline for processing Hi-C data from raw reads to normalized contact maps. HiC-Pro maps reads, detects valid ligation products, performs quality controls and generates intra- and inter-chromosomal contact maps. It includes a fast implementation of the iterative...

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Detalhes bibliográficos
Publicado no:Genome Biol
Main Authors: Servant, Nicolas, Varoquaux, Nelle, Lajoie, Bryan R., Viara, Eric, Chen, Chong-Jian, Vert, Jean-Philippe, Heard, Edith, Dekker, Job, Barillot, Emmanuel
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2015
Assuntos:
Software
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC4665391/
https://ncbi.nlm.nih.gov/pubmed/26619908
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s13059-015-0831-x
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