Plant noncoding RNA gene discovery by “single-genome comparative genomics”

le Chen, Chong-Jian, Zhou, Hui, Chen, Yue-Qin, Qu, Liang-Hu, Gautheret, Daniel
Foilsithe 2011

Genomewide Analysis of Box C/D and Box H/ACA snoRNAs in Chlamydomonas reinhardtii Reveals an Extensive Organization Into Intronic Gene Clusters

le Chen, Chun-Long, Chen, Chong-Jian, Vallon, Olivier, Huang, Zhan-Peng, Zhou, Hui, Qu, Liang-Hu
Foilsithe 2008

HiTC: exploration of high-throughput ‘C’ experiments

le Servant, Nicolas, Lajoie, Bryan R., Nora, Elphège P., Giorgetti, Luca, Chen, Chong-Jian, Heard, Edith, Dekker, Job, Barillot, Emmanuel
Foilsithe 2012

RNAi-Dependent and Independent Control of LINE1 Accumulation and Mobility in Mouse Embryonic Stem Cells

le Ciaudo, Constance, Jay, Florence, Okamoto, Ikuhiro, Chen, Chong-Jian, Sarazin, Alexis, Servant, Nicolas, Barillot, Emmanuel, Heard, Edith, Voinnet, Olivier
Foilsithe 2013

Correction: RNAi-Dependent and Independent Control of LINE1 Accumulation and Mobility in Mouse Embryonic Stem Cells

le Ciaudo, Constance, Jay, Florence, Okamoto, Ikuhiro, Chen, Chong-Jian, Sarazin, Alexis, Servant, Nicolas, Barillot, Emmanuel, Heard, Edith, Voinnet, Olivier
Foilsithe in PLoS Genet (2015)

Retraction: RNAi-Dependent and Independent Control of LINE1 Accumulation and Mobility in Mouse Embryonic Stem Cells

le Ciaudo, Constance, Jay, Florence, Okamoto, Ikuhiro, Chen, Chong-Jian, Sarazin, Alexis, Servant, Nicolas, Barillot, Emmanuel, Heard, Edith, Voinnet, Olivier
Foilsithe in PLoS Genet (2015)

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

le Servant, Nicolas, Varoquaux, Nelle, Lajoie, Bryan R., Viara, Eric, Chen, Chong-Jian, Vert, Jean-Philippe, Heard, Edith, Dekker, Job, Barillot, Emmanuel
Foilsithe in Genome Biol (2015)

Structural organization of the inactive X chromosome in the mouse

le Giorgetti, Luca, Lajoie, Bryan R., Carter, Ava C., Attia, Mikael, Zhan, Ye, Xu, Jin, Chen, Chong Jian, Kaplan, Noam, Chang, Howard Y., Heard, Edith, Dekker, Job
Foilsithe in Nature (2016)

Maternal LSD1/KDM1A is an essential regulator of chromatin and transcription landscapes during zygotic genome activation

le Ancelin, Katia, Syx, Laurène, Borensztein, Maud, Ranisavljevic, Noémie, Vassilev, Ivaylo, Briseño-Roa, Luis, Liu, Tao, Metzger, Eric, Servant, Nicolas, Barillot, Emmanuel, Chen, Chong-Jian, Schüle, Roland, Heard, Edith
Foilsithe in eLife (2016)

Xist-dependent imprinted X inactivation and the early developmental consequences of its failure

le Borensztein, Maud, Syx, Laurène, Ancelin, Katia, Diabangouaya, Patricia, Picard, Christel, Liu, Tao, Liang, Jun-Bin, Vassilev, Ivaylo, Galupa, Rafael, Servant, Nicolas, Barillot, Emmanuel, Surani, Azim, Chen, Chong-Jian, Heard, Edith
Foilsithe in Nat Struct Mol Biol (2017)

Kinetics of Xist-induced gene silencing can be predicted from combinations of epigenetic and genomic features

le Barros de Andrade e Sousa, Lisa, Jonkers, Iris, Syx, Laurène, Dunkel, Ilona, Chaumeil, Julie, Picard, Christel, Foret, Benjamin, Chen, Chong-Jian, Lis, John T., Heard, Edith, Schulz, Edda G., Marsico, Annalisa
Foilsithe in Genome Res (2019)

Contribution of epigenetic landscapes and transcription factors to X-chromosome reactivation in the inner cell mass

le Borensztein, Maud, Okamoto, Ikuhiro, Syx, Laurène, Guilbaud, Guillaume, Picard, Christel, Ancelin, Katia, Galupa, Rafael, Diabangouaya, Patricia, Servant, Nicolas, Barillot, Emmanuel, Surani, Azim, Saitou, Mitinori, Chen, Chong-Jian, Anastassiadis, Konstantinos, Heard, Edith
Foilsithe in Nat Commun (2017)

Statistical Approach to Decreasing the Error Rate of Noninvasive Prenatal Aneuploid Detection caused by Maternal Copy Number Variation

le Zhang, Han, Zhao, Yang-Yu, Song, Jing, Zhu, Qi-Ying, Yang, Hua, Zheng, Mei-Ling, Xuan, Zhao-Ling, Wei, Yuan, Chen, Yang, Yuan, Peng-Bo, Yu, Yang, Li, Da-Wei, Liang, Jun-Bin, Fan, Ling, Chen, Chong-Jian, Qiao, Jie
Foilsithe in Sci Rep (2015)

Characteristics and prognostic significance of genetic mutations in acute myeloid leukemia based on a targeted next‐generation sequencing technique

le Wang, Rui‐Qi, Chen, Chong‐Jian, Jing, Yu, Qin, Jia‐Yue, Li, Yan, Chen, Guo‐Feng, Zhou, Wei, Li, Yong‐Hui, Wang, Juan, Li, Da‐Wei, Zhao, Hong‐Mei, Wang, Bian‐Hong, Wang, Li‐Li, Wang, Hong, Wang, Meng‐Zhen, Gao, Xiao‐Ning, Yu, Li
Foilsithe in Cancer Med (2020)

The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions

le Merchant, Sabeeha S., Prochnik, Simon E., Vallon, Olivier, Harris, Elizabeth H., Karpowicz, Steven J., Witman, George B., Terry, Astrid, Salamov, Asaf, Fritz-Laylin, Lillian K., Maréchal-Drouard, Laurence, Marshall, Wallace F., Qu, Liang-Hu, Nelson, David R., Sanderfoot, Anton A., Spalding, Martin H., Kapitonov, Vladimir V., Ren, Qinghu, Ferris, Patrick, Lindquist, Erika, Shapiro, Harris, Lucas, Susan M., Grimwood, Jane, Schmutz, Jeremy, Cardol, Pierre, Cerutti, Heriberto, Chanfreau, Guillaume, Chen, Chun-Long, Cognat, Valérie, Croft, Martin T., Dent, Rachel, Dutcher, Susan, Fernández, Emilio, Ferris, Patrick, Fukuzawa, Hideya, González-Ballester, David, González-Halphen, Diego, Hallmann, Armin, Hanikenne, Marc, Hippler, Michael, Inwood, William, Jabbari, Kamel, Kalanon, Ming, Kuras, Richard, Lefebvre, Paul A., Lemaire, Stéphane D., Lobanov, Alexey V., Lohr, Martin, Manuell, Andrea, Meier, Iris, Mets, Laurens, Mittag, Maria, Mittelmeier, Telsa, Moroney, James V., Moseley, Jeffrey, Napoli, Carolyn, Nedelcu, Aurora M., Niyogi, Krishna, Novoselov, Sergey V., Paulsen, Ian T., Pazour, Greg, Purton, Saul, Ral, Jean-Philippe, Riaño-Pachón, Diego Mauricio, Riekhof, Wayne, Rymarquis, Linda, Schroda, Michael, Stern, David, Umen, James, Willows, Robert, Wilson, Nedra, Zimmer, Sara Lana, Allmer, Jens, Balk, Janneke, Bisova, Katerina, Chen, Chong-Jian, Elias, Marek, Gendler, Karla, Hauser, Charles, Lamb, Mary Rose, Ledford, Heidi, Long, Joanne C., Minagawa, Jun, Page, M. Dudley, Pan, Junmin, Pootakham, Wirulda, Roje, Sanja, Rose, Annkatrin, Stahlberg, Eric, Terauchi, Aimee M., Yang, Pinfen, Ball, Steven, Bowler, Chris, Dieckmann, Carol L., Gladyshev, Vadim N., Green, Pamela, Jorgensen, Richard, Mayfield, Stephen, Mueller-Roeber, Bernd, Rajamani, Sathish, Sayre, Richard T., Brokstein, Peter, Dubchak, Inna, Goodstein, David, Hornick, Leila, Huang, Y. Wayne, Jhaveri, Jinal, Luo, Yigong, Martínez, Diego, Ngau, Wing Chi Abby, Otillar, Bobby, Poliakov, Alexander, Porter, Aaron, Szajkowski, Lukasz, Werner, Gregory, Zhou, Kemin, Grigoriev, Igor V., Rokhsar, Daniel S., Grossman, Arthur R.
Foilsithe 2007