Quasi-cellular systems: stochastic simulation analysis at nanoscale range

door Calviello, Lorenzo, Stano, Pasquale, Mavelli, Fabio, Luisi, Pier Luigi, Marangoni, Roberto
Gepubliceerd in 2013

Super-resolution ribosome profiling reveals unannotated translation events in Arabidopsis

door Hsu, Polly Yingshan, Calviello, Lorenzo, Wu, Hsin-Yen Larry, Li, Fay-Wei, Rothfels, Carl J., Ohler, Uwe, Benfey, Philip N.
Gepubliceerd in Proc Natl Acad Sci U S A (2016)

Extensive identification and analysis of conserved small ORFs in animals

door Mackowiak, Sebastian D., Zauber, Henrik, Bielow, Chris, Thiel, Denise, Kutz, Kamila, Calviello, Lorenzo, Mastrobuoni, Guido, Rajewsky, Nikolaus, Kempa, Stefan, Selbach, Matthias, Obermayer, Benedikt
Gepubliceerd in Genome Biol (2015)

DDX3 depletion represses translation of mRNAs with complex 5′ UTRs

door Calviello, Lorenzo, Venkataramanan, Srivats, Rogowski, Karol J, Wyler, Emanuel, Wilkins, Kevin, Tejura, Malvika, Thai, Bao, Krol, Jacek, Filipowicz, Witold, Landthaler, Markus, Floor, Stephen N
Gepubliceerd in Nucleic Acids Res (2021)

Control of ribosomal protein synthesis by the Microprocessor complex

door Jiang, Xuan, Prabhakar, Amit, Van der Voorn, Stephanie M., Ghatpande, Prajakta, Celona, Barbara, Venkataramanan, Srivats, Calviello, Lorenzo, Lin, Chuwen, Wang, Wanpeng, Black, Brian L., Floor, Stephen N., Lagna, Giorgio, Hata, Akiko
Gepubliceerd in Sci Signal (2021)

RNA localization is a key determinant of neurite-enriched proteome

door Zappulo, Alessandra, van den Bruck, David, Ciolli Mattioli, Camilla, Franke, Vedran, Imami, Koshi, McShane, Erik, Moreno-Estelles, Mireia, Calviello, Lorenzo, Filipchyk, Andrei, Peguero-Sanchez, Esteban, Müller, Thomas, Woehler, Andrew, Birchmeier, Carmen, Merino, Enrique, Rajewsky, Nikolaus, Ohler, Uwe, Mazzoni, Esteban O., Selbach, Matthias, Akalin, Altuna, Chekulaeva, Marina
Gepubliceerd in Nat Commun (2017)

Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes

door Chong, Chloe, Müller, Markus, Pak, HuiSong, Harnett, Dermot, Huber, Florian, Grun, Delphine, Leleu, Marion, Auger, Aymeric, Arnaud, Marion, Stevenson, Brian J., Michaux, Justine, Bilic, Ilija, Hirsekorn, Antje, Calviello, Lorenzo, Simó-Riudalbas, Laia, Planet, Evarist, Lubiński, Jan, Bryśkiewicz, Marta, Wiznerowicz, Maciej, Xenarios, Ioannis, Zhang, Lin, Trono, Didier, Harari, Alexandre, Ohler, Uwe, Coukos, George, Bassani-Sternberg, Michal
Gepubliceerd in Nat Commun (2020)

A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing

door Gordon, David E., Jang, Gwendolyn M., Bouhaddou, Mehdi, Xu, Jiewei, Obernier, Kirsten, O’Meara, Matthew J., Guo, Jeffrey Z., Swaney, Danielle L., Tummino, Tia A., Huettenhain, Ruth, Kaake, Robyn M., Richards, Alicia L., Tutuncuoglu, Beril, Foussard, Helene, Batra, Jyoti, Haas, Kelsey, Modak, Maya, Kim, Minkyu, Haas, Paige, Polacco, Benjamin J., Braberg, Hannes, Fabius, Jacqueline M., Eckhardt, Manon, Soucheray, Margaret, Bennett, Melanie J., Cakir, Merve, McGregor, Michael J., Li, Qiongyu, Naing, Zun Zar Chi, Zhou, Yuan, Peng, Shiming, Kirby, Ilsa T., Melnyk, James E., Chorba, John S., Lou, Kevin, Dai, Shizhong A., Shen, Wenqi, Shi, Ying, Zhang, Ziyang, Barrio-Hernandez, Inigo, Memon, Danish, Hernandez-Armenta, Claudia, Mathy, Christopher J.P., Perica, Tina, Pilla, Kala B., Ganesan, Sai J., Saltzberg, Daniel J., Ramachandran, Rakesh, Liu, Xi, Rosenthal, Sara B., Calviello, Lorenzo, Venkataramanan, Srivats, Liboy-Lugo, Jose, Lin, Yizhu, Wankowicz, Stephanie A., Bohn, Markus, Sharp, Phillip P., Trenker, Raphael, Young, Janet M., Cavero, Devin A., Hiatt, Joseph, Roth, Theodore L., Rathore, Ujjwal, Subramanian, Advait, Noack, Julia, Hubert, Mathieu, Roesch, Ferdinand, Vallet, Thomas, Meyer, Björn, White, Kris M., Miorin, Lisa, Rosenberg, Oren S., Verba, Kliment A, Agard, David, Ott, Melanie, Emerman, Michael, Ruggero, Davide, García-Sastre, Adolfo, Jura, Natalia, von Zastrow, Mark, Taunton, Jack, Ashworth, Alan, Schwartz, Olivier, Vignuzzi, Marco, d’Enfert, Christophe, Mukherjee, Shaeri, Jacobson, Matt, Malik, Harmit S., Fujimori, Danica G., Ideker, Trey, Craik, Charles S., Floor, Stephen, Fraser, James S., Gross, John, Sali, Andrej, Kortemme, Tanja, Beltrao, Pedro, Shokat, Kevan, Shoichet, Brian K., Krogan, Nevan J.
Gepubliceerd in bioRxiv (2020)

A SARS-CoV-2 Protein Interaction Map Reveals Targets for Drug-Repurposing

door Gordon, David E., Jang, Gwendolyn M., Bouhaddou, Mehdi, Xu, Jiewei, Obernier, Kirsten, White, Kris M., O’Meara, Matthew J., Rezelj, Veronica V., Guo, Jeffrey Z., Swaney, Danielle L., Tummino, Tia A., Huettenhain, Ruth, Kaake, Robyn M., Richards, Alicia L., Tutuncuoglu, Beril, Foussard, Helene, Batra, Jyoti, Haas, Kelsey, Modak, Maya, Kim, Minkyu, Haas, Paige, Polacco, Benjamin J., Braberg, Hannes, Fabius, Jacqueline M., Eckhardt, Manon, Soucheray, Margaret, Bennett, Melanie J., Cakir, Merve, McGregor, Michael J., Li, Qiongyu, Meyer, Bjoern, Roesch, Ferdinand, Vallet, Thomas, Kain, Alice Mac, Miorin, Lisa, Moreno, Elena, Naing, Zun Zar Chi, Zhou, Yuan, Peng, Shiming, Shi, Ying, Zhang, Ziyang, Shen, Wenqi, Kirby, Ilsa T., Melnyk, James E., Chorba, John S., Lou, Kevin, Dai, Shizhong A., Barrio-Hernandez, Inigo, Memon, Danish, Hernandez-Armenta, Claudia, Lyu, Jiankun, Mathy, Christopher J.P., Perica, Tina, Pilla, Kala B., Ganesan, Sai J., Saltzberg, Daniel J., Rakesh, Ramachandran, Liu, Xi, Rosenthal, Sara B., Calviello, Lorenzo, Venkataramanan, Srivats, Liboy-Lugo, Jose, Lin, Yizhu, Huang, Xi-Ping, Liu, YongFeng, Wankowicz, Stephanie A., Bohn, Markus, Safari, Maliheh, Ugur, Fatima S., Koh, Cassandra, Savar, Nastaran Sadat, Tran, Quang Dinh, Shengjuler, Djoshkun, Fletcher, Sabrina J, O’Neal, Michael C., Cai, Yiming, C.J.Chang, Jason, Broadhurst, David J., Klippsten, Saker, Sharp, Phillip P., Wenzell, Nicole A., Kuzuoglu, Duygu, Wang, Hao-Yuan, Trenker, Raphael, Young, Janet M., Cavero, Devin A., Hiatt, Joseph, Roth, Theodore L., Rathore, Ujjwal, Subramanian, Advait, Noack, Julia, Hubert, Mathieu, Stroud, Robert M., Frankel, Alan D., Rosenberg, Oren S., Verba, Kliment A, Agard, David A., Ott, Melanie, Emerman, Michael, Jura, Natalia, von Zastrow, Mark, Verdin, Eric, Ashworth, Alan, Schwartz, Olivier, d’Enfert, Christophe, Mukherjee, Shaeri, Jacobson, Matt, Malik, Harmit S., Fujimori, Danica G., Ideker, Trey, Craik, Charles S., Floor, Stephen N., Fraser, James S., Gross, John D., Sali, Andrej, Roth, Bryan L., Ruggero, Davide, Taunton, Jack, Kortemme, Tanja, Beltrao, Pedro, Vignuzzi, Marco, García-Sastre, Adolfo, Shokat, Kevan M., Shoichet, Brian K., Krogan, Nevan J.
Gepubliceerd in Nature (2020)