JACUSA: site-specific identification of RNA editing events from replicate sequencing data

по Piechotta, Michael, Wyler, Emanuel, Ohler, Uwe, Landthaler, Markus, Dieterich, Christoph
Опубликовано в: BMC Bioinformatics (2017)

Rattus norvegicus BN/SHR liver and heart left ventricle ribosomal RNA depleted directional RNA sequencing

по Wyler, Emanuel, van Heesch, Sebastiaan, Adami, Eleonora, Hubner, Norbert, Landthaler, Markus
Опубликовано в: BMC Res Notes (2017)

Inhibition of NF-κB activation with designed ankyrin-repeat proteins targeting the ubiquitin-binding/oligomerization domain of NEMO

по Wyler, Emanuel, Kaminska, Monika, Coïc, Yves-Marie, Baleux, Françoise, Véron, Michel, Agou, Fabrice
Опубликовано 2007

Tandem affinity purification combined with inducible shRNA expression as a tool to study the maturation of macromolecular assemblies

по Wyler, Emanuel, Zimmermann, Mirjam, Widmann, Barbara, Gstaiger, Matthias, Pfannstiel, Jens, Kutay, Ulrike, Zemp, Ivo
Опубликовано 2011

The kinase activity of human Rio1 is required for final steps of cytoplasmic maturation of 40S subunits

по Widmann, Barbara, Wandrey, Franziska, Badertscher, Lukas, Wyler, Emanuel, Pfannstiel, Jens, Zemp, Ivo, Kutay, Ulrike
Опубликовано 2012

An immediate–late gene expression module decodes ERK signal duration

по Uhlitz, Florian, Sieber, Anja, Wyler, Emanuel, Fritsche‐Guenther, Raphaela, Meisig, Johannes, Landthaler, Markus, Klinger, Bertram, Blüthgen, Nils
Опубликовано в: Mol Syst Biol (2017)

An immediate–late gene expression module decodes ERK signal duration

по Uhlitz, Florian, Sieber, Anja, Wyler, Emanuel, Fritsche‐Guenther, Raphaela, Meisig, Johannes, Landthaler, Markus, Klinger, Bertram, Blüthgen, Nils
Опубликовано в: Mol Syst Biol (2017)

A Protein Inventory of Human Ribosome Biogenesis Reveals an Essential Function of Exportin 5 in 60S Subunit Export

по Wild, Thomas, Horvath, Peter, Wyler, Emanuel, Widmann, Barbara, Badertscher, Lukas, Zemp, Ivo, Kozak, Karol, Csucs, Gabor, Lund, Elsebet, Kutay, Ulrike
Опубликовано 2010

DDX3 depletion represses translation of mRNAs with complex 5′ UTRs

по Calviello, Lorenzo, Venkataramanan, Srivats, Rogowski, Karol J, Wyler, Emanuel, Wilkins, Kevin, Tejura, Malvika, Thai, Bao, Krol, Jacek, Filipowicz, Witold, Landthaler, Markus, Floor, Stephen N
Опубликовано в: Nucleic Acids Res (2021)

Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program

по Wyler, Emanuel, Franke, Vedran, Menegatti, Jennifer, Kocks, Christine, Boltengagen, Anastasiya, Praktiknjo, Samantha, Walch-Rückheim, Barbara, Bosse, Jens, Rajewsky, Nikolaus, Grässer, Friedrich, Akalin, Altuna, Landthaler, Markus
Опубликовано в: Nat Commun (2019)

CRNKL1 Is a Highly Selective Regulator of Intron-Retaining HIV-1 and Cellular mRNAs

по Xiao, Han, Wyler, Emanuel, Milek, Miha, Grewe, Bastian, Kirchner, Philipp, Ekici, Arif, Silva, Ana Beatriz Oliveira Villela, Jungnickl, Doris, Full, Florian, Thomas, Marco, Landthaler, Markus, Ensser, Armin, Überla, Klaus
Опубликовано в: mBio (2021)

The Zinc Finger Antiviral Protein ZAP Restricts Human Cytomegalovirus and Selectively Binds and Destabilizes Viral UL4/UL5 Transcripts

по Gonzalez-Perez, Ana Cristina, Stempel, Markus, Wyler, Emanuel, Urban, Christian, Piras, Antonio, Hennig, Thomas, Ganskih, Sabina, Wei, Yuanjie, Heim, Albert, Landthaler, Markus, Pichlmair, Andreas, Dölken, Lars, Munschauer, Mathias, Erhard, Florian, Brinkmann, Melanie M.
Опубликовано в: mBio (2021)

Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection

по Wyler, Emanuel, Menegatti, Jennifer, Franke, Vedran, Kocks, Christine, Boltengagen, Anastasiya, Hennig, Thomas, Theil, Kathrin, Rutkowski, Andrzej, Ferrai, Carmelo, Baer, Laura, Kermas, Lisa, Friedel, Caroline, Rajewsky, Nikolaus, Akalin, Altuna, Dölken, Lars, Grässer, Friedrich, Landthaler, Markus
Опубликовано в: Genome Biol (2017)

Translation of CircRNAs

по Pamudurti, Nagarjuna Reddy, Bartok, Osnat, Jens, Marvin, Ashwal-Fluss, Reut, Stottmeister, Christin, Ruhe, Larissa, Hanan, Mor, Wyler, Emanuel, Perez-Hernandez, Daniel, Ramberger, Evelyn, Shenzis, Shlomo, Samson, Moshe, Dittmar, Gunnar, Landthaler, Markus, Chekulaeva, Marina, Rajewsky, Nikolaus, Kadener, Sebastian
Опубликовано в: Mol Cell (2017)

RC3H1 post-transcriptionally regulates A20 mRNA and modulates the activity of the IKK/NF-κB pathway

по Murakawa, Yasuhiro, Hinz, Michael, Mothes, Janina, Schuetz, Anja, Uhl, Michael, Wyler, Emanuel, Yasuda, Tomoharu, Mastrobuoni, Guido, Friedel, Caroline C., Dölken, Lars, Kempa, Stefan, Schmidt-Supprian, Marc, Blüthgen, Nils, Backofen, Rolf, Heinemann, Udo, Wolf, Jana, Scheidereit, Claus, Landthaler, Markus
Опубликовано в: Nat Commun (2015)

Mutant FUS and ELAVL4 (HuD) Aberrant Crosstalk in Amyotrophic Lateral Sclerosis

по De Santis, Riccardo, Alfano, Vincenzo, de Turris, Valeria, Colantoni, Alessio, Santini, Laura, Garone, Maria Giovanna, Antonacci, Giuseppe, Peruzzi, Giovanna, Sudria-Lopez, Emma, Wyler, Emanuel, Anink, Jasper J., Aronica, Eleonora, Landthaler, Markus, Pasterkamp, R. Jeroen, Bozzoni, Irene, Rosa, Alessandro
Опубликовано в: Cell Rep (2019)

Integrative functional genomics decodes herpes simplex virus 1

по Whisnant, Adam W., Jürges, Christopher S., Hennig, Thomas, Wyler, Emanuel, Prusty, Bhupesh, Rutkowski, Andrzej J., L’hernault, Anne, Djakovic, Lara, Göbel, Margarete, Döring, Kristina, Menegatti, Jennifer, Antrobus, Robin, Matheson, Nicholas J., Künzig, Florian W. H., Mastrobuoni, Guido, Bielow, Chris, Kempa, Stefan, Liang, Chunguang, Dandekar, Thomas, Zimmer, Ralf, Landthaler, Markus, Grässer, Friedrich, Lehner, Paul J., Friedel, Caroline C., Erhard, Florian, Dölken, Lars
Опубликовано в: Nat Commun (2020)

Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy

по Wyler, Emanuel, Mösbauer, Kirstin, Franke, Vedran, Diag, Asija, Gottula, Lina Theresa, Arsiè, Roberto, Klironomos, Filippos, Koppstein, David, Hönzke, Katja, Ayoub, Salah, Buccitelli, Christopher, Hoffmann, Karen, Richter, Anja, Legnini, Ivano, Ivanov, Andranik, Mari, Tommaso, Del Giudice, Simone, Papies, Jan, Praktiknjo, Samantha, Meyer, Thomas F., Müller, Marcel Alexander, Niemeyer, Daniela, Hocke, Andreas, Selbach, Matthias, Akalin, Altuna, Rajewsky, Nikolaus, Drosten, Christian, Landthaler, Markus
Опубликовано в: iScience (2021)

SARS-CoV-2-mediated dysregulation of metabolism and autophagy uncovers host-targeting antivirals

по Gassen, Nils C., Papies, Jan, Bajaj, Thomas, Emanuel, Jackson, Dethloff, Frederik, Chua, Robert Lorenz, Trimpert, Jakob, Heinemann, Nicolas, Niemeyer, Christine, Weege, Friderike, Hönzke, Katja, Aschman, Tom, Heinz, Daniel E., Weckmann, Katja, Ebert, Tim, Zellner, Andreas, Lennarz, Martina, Wyler, Emanuel, Schroeder, Simon, Richter, Anja, Niemeyer, Daniela, Hoffmann, Karen, Meyer, Thomas F., Heppner, Frank L., Corman, Victor M., Landthaler, Markus, Hocke, Andreas C., Morkel, Markus, Osterrieder, Nikolaus, Conrad, Christian, Eils, Roland, Radbruch, Helena, Giavalisco, Patrick, Drosten, Christian, Müller, Marcel A.
Опубликовано в: Nat Commun (2021)

Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment

по Schulte-Schrepping, Jonas, Reusch, Nico, Paclik, Daniela, Baßler, Kevin, Schlickeiser, Stephan, Zhang, Bowen, Krämer, Benjamin, Krammer, Tobias, Brumhard, Sophia, Bonaguro, Lorenzo, De Domenico, Elena, Wendisch, Daniel, Grasshoff, Martin, Kapellos, Theodore S., Beckstette, Michael, Pecht, Tal, Saglam, Adem, Dietrich, Oliver, Mei, Henrik E., Schulz, Axel R., Conrad, Claudia, Kunkel, Désirée, Vafadarnejad, Ehsan, Xu, Cheng-Jian, Horne, Arik, Herbert, Miriam, Drews, Anna, Thibeault, Charlotte, Pfeiffer, Moritz, Hippenstiel, Stefan, Hocke, Andreas, Müller-Redetzky, Holger, Heim, Katrin-Moira, Machleidt, Felix, Uhrig, Alexander, Bosquillon de Jarcy, Laure, Jürgens, Linda, Stegemann, Miriam, Glösenkamp, Christoph R., Volk, Hans-Dieter, Goffinet, Christine, Landthaler, Markus, Wyler, Emanuel, Georg, Philipp, Schneider, Maria, Dang-Heine, Chantip, Neuwinger, Nick, Kappert, Kai, Tauber, Rudolf, Corman, Victor, Raabe, Jan, Kaiser, Kim Melanie, Vinh, Michael To, Rieke, Gereon, Meisel, Christian, Ulas, Thomas, Becker, Matthias, Geffers, Robert, Witzenrath, Martin, Drosten, Christian, Suttorp, Norbert, von Kalle, Christof, Kurth, Florian, Händler, Kristian, Schultze, Joachim L., Aschenbrenner, Anna C., Li, Yang, Nattermann, Jacob, Sawitzki, Birgit, Saliba, Antoine-Emmanuel, Sander, Leif Erik
Опубликовано в: Cell (2020)