Primary and heterotrophic productivity relate to multikingdom diversity in a hypersaline mat

由 Bernstein, Hans C., Brislawn, Colin J., Dana, Karl, Flores-Wentz, Tobias, Cory, Alexandra B., Fansler, Sarah J., Fredrickson, James K., Moran, James J.
發表在 FEMS Microbiol Ecol (2017)

Both the intratumoral immune and microbial microenvironment are linked to recurrence in human colon cancer: results from a prospective, multicenter nodal ultrastaging trial

由 Noguti, Juliana, Chan, Alfred A., Bandera, Bradley, Brislawn, Colin J., Protic, Mladjan, Sim, Myung S., Jansson, Janet K., Bilchik, Anton J., Lee, Delphine J.
發表在 Oncotarget (2018)

Gut Microbial Alterations Associated With Protection From Autoimmune Uveitis

由 Nakamura, Yukiko K., Metea, Christina, Karstens, Lisa, Asquith, Mark, Gruner, Henry, Moscibrocki, Cathleen, Lee, Iris, Brislawn, Colin J., Jansson, Janet K., Rosenbaum, James T., Lin, Phoebe
發表在 Invest Ophthalmol Vis Sci (2016)

Light-Stress Influences the Composition of the Murine Gut Microbiome, Memory Function, and Plasma Metabolome

由 Kim, Young-Mo, Snijders, Antoine M., Brislawn, Colin J., Stratton, Kelly G., Zink, Erika M., Fansler, Sarah J., Metz, Thomas O., Mao, Jian-Hua, Jansson, Janet K.
發表在 Front Mol Biosci (2019)

Corrigendum: Light-Stress Influences the Composition of the Murine Gut Microbiome, Memory Function, and Plasma Metabolome

由 Kim, Young-Mo, Snijders, Antoine M., Brislawn, Colin J., Stratton, Kelly G., Zink, Erika M., Fansler, Sarah J., Metz, Thomas O., Mao, Jian-Hua, Jansson, Janet K.
發表在 Front Mol Biosci (2021)

Forfeiting the priority effect: turnover defines biofilm community succession

由 Brislawn, Colin J., Graham, Emily B., Dana, Karl, Ihardt, Peter, Fansler, Sarah J., Chrisler, William B., Cliff, John B., Stegen, James C., Moran, James J., Bernstein, Hans C.
發表在 ISME J (2019)

Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes

由 White, Richard Allen, Bottos, Eric M., Roy Chowdhury, Taniya, Zucker, Jeremy D., Brislawn, Colin J., Nicora, Carrie D., Fansler, Sarah J., Glaesemann, Kurt R., Glass, Kevin, Jansson, Janet K.
發表在 mSystems (2016)

Selection, Succession, and Stabilization of Soil Microbial Consortia

由 Zegeye, Elias K., Brislawn, Colin J., Farris, Yuliya, Fansler, Sarah J., Hofmockel, Kirsten S., Jansson, Janet K., Wright, Aaron T., Graham, Emily B., Naylor, Dan, McClure, Ryan S., Bernstein, Hans C.
發表在 mSystems (2019)

Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture

由 Khan, Nymul, Maezato, Yukari, McClure, Ryan S., Brislawn, Colin J., Mobberley, Jennifer M., Isern, Nancy, Chrisler, William B., Markillie, Lye Meng, Barney, Brett M., Song, Hyun-Seob, Nelson, William C., Bernstein, Hans C.
發表在 Sci Rep (2018)

Assessing impacts of unconventional natural gas extraction on microbial communities in headwater stream ecosystems in Northwestern Pennsylvania

由 Trexler, Ryan, Solomon, Caroline, Brislawn, Colin J., Wright, Justin R., Rosenberger, Abigail, McClure, Erin E., Grube, Alyssa M., Peterson, Mark P., Keddache, Mehdi, Mason, Olivia U., Hazen, Terry C., Grant, Christopher J., Lamendella, Regina
發表在 Front Microbiol (2014)

Dynamics of the human gut microbiome in Inflammatory Bowel Disease

由 Halfvarson, Jonas, Brislawn, Colin J., Lamendella, Regina, Vázquez-Baeza, Yoshiki, Walters, William A., Bramer, Lisa M., D’Amato, Mauro, Bonfiglio, Ferdinando, McDonald, Daniel, Gonzalez, Antonio, McClure, Erin E., Dunklebarger, Mitchell F., Knight, Rob, Jansson, Janet K.
發表在 Nat Microbiol (2017)

Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome

由 Maier, Tanja V., Lucio, Marianna, Lee, Lang Ho, VerBerkmoes, Nathan C., Brislawn, Colin J., Bernhardt, Jörg, Lamendella, Regina, McDermott, Jason E., Bergeron, Nathalie, Heinzmann, Silke S., Morton, James T., González, Antonio, Ackermann, Gail, Knight, Rob, Riedel, Katharina, Krauss, Ronald M., Schmitt-Kopplin, Philippe, Jansson, Janet K.
發表在 mBio (2017)

Genetic and metabolic links between the murine microbiome and memory

由 Mao, Jian-Hua, Kim, Young-Mo, Zhou, Yan-Xia, Hu, Dehong, Zhong, Chenhan, Chang, Hang, Brislawn, Colin J., Fansler, Sarah, Langley, Sasha, Wang, Yunshan, Peisl, B. Y. Loulou, Celniker, Susan E., Threadgill, David W., Wilmes, Paul, Orr, Galya, Metz, Thomas O., Jansson, Janet K., Snijders, Antoine M.
發表在 Microbiome (2020)

Correction to: Genetic and metabolic links between the murine microbiome and memory

由 Mao, Jian-Hua, Kim, Young-Mo, Zhou, Yan-Xia, Hu, Dehong, Zhong, Chenhan, Chang, Hang, Brislawn, Colin J., Fansler, Sarah, Langley, Sasha, Wang, Yunshan, Peisl, B. Y. Loulou, Celniker, Susan E., Threadgill, David W., Wilmes, Paul, Orr, Galya, Metz, Thomas O., Jansson, Janet K., Snijders, Antoine M.
發表在 Microbiome (2020)

Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations

由 Roy Chowdhury, Taniya, Lee, Joon-Yong, Bottos, Eric M., Brislawn, Colin J., White, Richard Allen, Bramer, Lisa M., Brown, Joseph, Zucker, Jeremy D., Kim, Young-Mo, Jumpponen, Ari, Rice, Charles W., Fansler, Sarah J., Metz, Thomas O., McCue, Lee Ann, Callister, Stephen J., Song, Hyun-Seob, Jansson, Janet K.
發表在 mSystems (2019)

Qiita: rapid, web-enabled microbiome meta-analysis

由 Gonzalez, Antonio, Navas-Molina, Jose A., Kosciolek, Tomasz, McDonald, Daniel, Vázquez-Baeza, Yoshiki, Ackermann, Gail, DeReus, Jeff, Janssen, Stefan, Swafford, Austin D., Orchanian, Stephanie B., Sanders, Jon G., Shorenstein, Joshua, Holste, Hannes, Petrus, Semar, Robbins-Pianka, Adam, Brislawn, Colin J., Wang, Mingxun, Rideout, Jai Ram, Bolyen, Evan, Dillon, Matthew, Caporaso, J Gregory, Dorrestein, Pieter C., Knight, Rob
發表在 Nat Methods (2018)

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

由 Lloyd-Price, Jason, Arze, Cesar, Ananthakrishnan, Ashwin N., Schirmer, Melanie, Avila-Pacheco, Julian, Poon, Tiffany W., Andrews, Elizabeth, Ajami, Nadim J., Bonham, Kevin S., Brislawn, Colin J., Casero, David, Courtney, Holly, Gonzalez, Antonio, Graeber, Thomas G., Hall, A. Brantley, Lake, Kathleen, Landers, Carol J., Mallick, Himel, Plichta, Damian R., Prasad, Mahadev, Rahnavard, Gholamali, Sauk, Jenny, Shungin, Dmitry, Vázquez-Baeza, Yoshiki, White, Richard A., Braun, Jonathan, Denson, Lee A., Jansson, Janet K., Knight, Rob, Kugathasan, Subra, McGovern, Dermot P. B., Petrosino, Joseph F., Stappenbeck, Thaddeus S., Winter, Harland S., Clish, Clary B., Franzosa, Eric A., Vlamakis, Hera, Xavier, Ramnik J., Huttenhower, Curtis
發表在 Nature (2019)

A communal catalogue reveals Earth’s multiscale microbial diversity

由 Thompson, Luke R., Sanders, Jon G., McDonald, Daniel, Amir, Amnon, Ladau, Joshua, Locey, Kenneth J., Prill, Robert J., Tripathi, Anupriya, Gibbons, Sean M., Ackermann, Gail, Navas-Molina, Jose A., Janssen, Stefan, Kopylova, Evguenia, Vázquez-Baeza, Yoshiki, González, Antonio, Morton, James T., Mirarab, Siavash, Zech Xu, Zhenjiang, Jiang, Lingjing, Haroon, Mohamed F., Kanbar, Jad, Zhu, Qiyun, Jin Song, Se, Kosciolek, Tomasz, Bokulich, Nicholas A., Lefler, Joshua, Brislawn, Colin J., Humphrey, Gregory, Owens, Sarah M., Hampton-Marcell, Jarrad, Berg-Lyons, Donna, McKenzie, Valerie, Fierer, Noah, Fuhrman, Jed A., Clauset, Aaron, Stevens, Rick L., Shade, Ashley, Pollard, Katherine S., Goodwin, Kelly D., Jansson, Janet K., Gilbert, Jack A., Knight, Rob
發表在 Nature (2017)

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

由 Bolyen, Evan, Rideout, Jai Ram, Dillon, Matthew R., Bokulich, Nicholas A., Abnet, Christian C., Al-Ghalith, Gabriel A., Alexander, Harriet, Alm, Eric J., Arumugam, Manimozhiyan, Asnicar, Francesco, Bai, Yang, Bisanz, Jordan E., Bittinger, Kyle, Brejnrod, Asker, Brislawn, Colin J., Brown, C. Titus, Callahan, Benjamin J., Caraballo-Rodríguez, Andrés Mauricio, Chase, John, Cope, Emily K., Da Silva, Ricardo, Diener, Christian, Dorrestein, Pieter C., Douglas, Gavin M., Durall, Daniel M., Duvallet, Claire, Edwardson, Christian F., Ernst, Madeleine, Estaki, Mehrbod, Fouquier, Jennifer, Gauglitz, Julia M., Gibbons, Sean M., Gibson, Deanna L., Gonzalez, Antonio, Gorlick, Kestrel, Guo, Jiarong, Hillmann, Benjamin, Holmes, Susan, Holste, Hannes, Huttenhower, Curtis, Huttley, Gavin A., Janssen, Stefan, Jarmusch, Alan K., Jiang, Lingjing, Kaehler, Benjamin D., Kang, Kyo Bin, Keefe, Christopher R., Keim, Paul, Kelley, Scott T., Knights, Dan, Koester, Irina, Kosciolek, Tomasz, Kreps, Jorden, Langille, Morgan G. I., Lee, Joslynn, Ley, Ruth, Liu, Yong-Xin, Loftfield, Erikka, Lozupone, Catherine, Maher, Massoud, Marotz, Clarisse, Martin, Bryan D., McDonald, Daniel, McIver, Lauren J., Melnik, Alexey V., Metcalf, Jessica L., Morgan, Sydney C., Morton, Jamie T., Naimey, Ahmad Turan, Navas-Molina, Jose A., Nothias, Louis Felix, Orchanian, Stephanie B., Pearson, Talima, Peoples, Samuel L., Petras, Daniel, Preuss, Mary Lai, Pruesse, Elmar, Rasmussen, Lasse Buur, Rivers, Adam, Robeson, Michael S., Rosenthal, Patrick, Segata, Nicola, Shaffer, Michael, Shiffer, Arron, Sinha, Rashmi, Song, Se Jin, Spear, John R., Swafford, Austin D., Thompson, Luke R., Torres, Pedro J., Trinh, Pauline, Tripathi, Anupriya, Turnbaugh, Peter J., Ul-Hasan, Sabah, vander Hooft, Justin J. J., Vargas, Fernando, Vázquez-Baeza, Yoshiki, Vogtmann, Emily, von Hippel, Max, Walters, William, Wan, Yunhu, Wang, Mingxun, Warren, Jonathan, Weber, Kyle C., Williamson, Charles H. D., Willis, Amy D., Xu, Zhenjiang Zech, Zaneveld, Jesse R., Zhang, Yilong, Zhu, Qiyun, Knight, Rob, Caporaso, J. Gregory
發表在 Nat Biotechnol (2019)