Introduction to Computational Proteomics

Por Colinge, Jacques, Bennett, Keiryn L
Publicado em 2007

Using iTRAQ(®) Combined with Tandem Affinity Purification to Enhance Low-abundance Proteins Associated with Somatically-mutated EGFR Core Complexes in Lung Cancer

Por Haura, Eric B., Müller, André, Brietwieser, Florian P., Li, Jiannong, Grebien, Florian, Colinge, Jacques, Bennett, Keiryn L.
Publicado em 2010

Optimisation of Downscaled Tandem Affinity Purifications to Identify Core Protein Complexes

Por Haura, Eric B., Sacco, Roberto, Li, Jiannong, Müller, André C., Grebien, Florian, Superti-Furga, Giulio, Bennett, Keiryn L.
Publicado em 2012

Expanding the Interactome of the Noncanonical NF-κB Signaling Pathway

Por Willmann, Katharina L., Sacco, Roberto, Martins, Rui, Garncarz, Wojciech, Krolo, Ana, Knapp, Sylvia, Bennett, Keiryn L., Boztug, Kaan
Publicado no J Proteome Res (2016)

Charting the molecular network of the drug target Bcr-Abl

Por Brehme, Marc, Hantschel, Oliver, Colinge, Jacques, Kaupe, Ines, Planyavsky, Melanie, Köcher, Thomas, Mechtler, Karl, Bennett, Keiryn L., Superti-Furga, Giulio
Publicado em 2009

Initial characterization of the human central proteome

Por Burkard, Thomas R, Planyavsky, Melanie, Kaupe, Ines, Breitwieser, Florian P, Bürckstümmer, Tilmann, Bennett, Keiryn L, Superti-Furga, Giulio, Colinge, Jacques
Publicado em 2011

abFASP-MS: Affinity-Based Filter-Aided Sample Preparation Mass Spectrometry for Quantitative Analysis of Chemically Labeled Protein Complexes

Por Huber, Marie L., Sacco, Roberto, Parapatics, Katja, Skucha, Anna, Khamina, Kseniya, Müller, André C., Rudashevskaya, Elena L., Bennett, Keiryn L.
Publicado em 2014

Affinity Purification Strategies for Proteomic Analysis of Transcription Factor Complexes

Por Giambruno, Roberto, Grebien, Florian, Stukalov, Alexey, Knoll, Christian, Planyavsky, Melanie, Rudashevskaya, Elena L., Colinge, Jacques, Superti-Furga, Giulio, Bennett, Keiryn L.
Publicado em 2013

The DEAD-box helicase DDX3X is a critical component of the TANK-binding kinase 1-dependent innate immune response

Por Soulat, Didier, Bürckstümmer, Tilmann, Westermayer, Sandra, Goncalves, Adriana, Bauch, Angela, Stefanovic, Adrijana, Hantschel, Oliver, Bennett, Keiryn L, Decker, Thomas, Superti-Furga, Giulio
Publicado em 2008

The lysine methyltransferase SMYD3 interacts with hepatitis C virus NS5A and is a negative regulator of viral particle production

Por Eberle, Carol-Ann, Zayas, Margarita, Stukalov, Alexey, Pichlmair, Andreas, Alvisi, Gualtiero, Müller, André C., Bennett, Keiryn L., Bartenschlager, Ralf, Superti-Furga, Giulio
Publicado em 2014

Proteome-wide small molecule and metabolite interaction mapping

Por Huber, Kilian V. M., Olek, Karin M., Müller, André C., Soon Heng Tan, Chris, Bennett, Keiryn L., Colinge, Jacques, Superti-Furga, Giulio
Publicado no Nat Methods (2015)

A potent and highly specific FN3 monobody inhibitor of the Abl SH2 domain

Por Wojcik, John, Hantschel, Oliver, Grebien, Florian, Kaupe, Ines, Bennett, Keiryn L., Barkinge, John, Jones, Richard B., Koide, Akiko, Superti-Furga, Giulio, Koide, Shohei
Publicado em 2010

Identifying Kinase Substrates via a Heavy ATP Kinase Assay and Quantitative Mass Spectrometry

Por Müller, André C., Giambruno, Roberto, Weißer, Juliane, Májek, Peter, Hofer, Alexandre, Bigenzahn, Johannes W., Superti-Furga, Giulio, Jessen, Henning J., Bennett, Keiryn L.
Publicado no Sci Rep (2016)

The Btk tyrosine kinase is a major target of the Bcr-Abl inhibitor dasatinib

Por Hantschel, Oliver, Rix, Uwe, Schmidt, Uwe, Bürckstümmer, Tilmann, Kneidinger, Michael, Schütze, Gregor, Colinge, Jacques, Bennett, Keiryn L., Ellmeier, Wilfried, Valent, Peter, Superti-Furga, Giulio
Publicado em 2007

NUP214-ABL1-mediated cell proliferation in T-cell acute lymphoblastic leukemia is dependent on the LCK kinase and various interacting proteins

Por De Keersmaecker, Kim, Porcu, Michaël, Cox, Luk, Girardi, Tiziana, Vandepoel, Roel, de Beeck, Joyce Op, Gielen, Olga, Mentens, Nicole, Bennett, Keiryn L., Hantschel, Oliver
Publicado em 2014

The 2012 PRG study: Assessing Longitudinal Variability in Routine Peptide LC-MS/MS Analysis

Por Andacht, Tracy M., Bennett, Keiryn, Bystrom, Cory, Dangott, Larry, Leszyk, John, Molina, Henrik, Moritz, Robert L, Phinney, Brett S., Thompson, J. Will, Chambers, Matthew, Tabb, David, Bunger, Maureen
Publicado em 2012

The 2012 PRG Study: Assessing Longitudinal Variability in Routine Peptide LC-MS/MS Analysis

Por Andacht, Tracy M., Bennett, Keiryn, Bystrom, Cory, Dangott, Larry, Leszyk, John, Molina, Henrik, Moritz, Robert L., Phinney, Brett S., Thompson, J. Will, Chambers, Matthew, Tabb, David, Bunger, Maureen
Publicado em 2012

A Miniaturized Chemical Proteomic Approach for Target Profiling of Clinical Kinase Inhibitors in Tumor Biopsies

Por Chamrád, Ivo, Rix, Uwe, Stukalov, Alexey, Gridling, Manuela, Parapatics, Katja, Müller, André C., Altiok, Soner, Colinge, Jacques, Superti-Furga, Giulio, Haura, Eric B., Bennett, Keiryn L.
Publicado em 2013

Internalization of Pseudomonas aeruginosa Strain PAO1 into Epithelial Cells Is Promoted by Interaction of a T6SS Effector with the Microtubule Network

Por Sana, Thibault G., Baumann, Christoph, Merdes, Andreas, Soscia, Chantal, Rattei, Thomas, Hachani, Abderrahman, Jones, Cerith, Bennett, Keiryn L., Filloux, Alain, Superti-Furga, Giulio, Voulhoux, Romé, Bleves, Sophie
Publicado no mBio (2015)

A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma

Por Stewart, Paul A., Parapatics, Katja, Welsh, Eric A., Müller, André C., Cao, Haoyun, Fang, Bin, Koomen, John M., Eschrich, Steven A., Bennett, Keiryn L., Haura, Eric B.
Publicado no PLoS One (2015)