Self assembly of model polymers into biological random networks

od Bailey, Matthew H.J., Wilson, Mark
Wydane w Comput Struct Biotechnol J (2021)

Characteristics of The Cancer Genome Atlas cases relative to U.S. general population cancer cases

od Wang, Xiaoyan, Steensma, Joseph T., Bailey, Matthew H., Feng, Qianxi, Padda, Hannah, Johnson, Kimberly J.
Wydane w Br J Cancer (2018)

Mitochondrial Haplotypes Associated with Biomarkers for Alzheimer’s Disease

od Ridge, Perry G., Koop, Andre, Maxwell, Taylor J., Bailey, Matthew H., Swerdlow, Russell H., Kauwe, John S. K., Honea, Robyn A.
Wydane 2013

Population substructure in Cache County, Utah: the Cache County study

od Sharp, Aaron R, Ridge, Perry G, Bailey, Matthew H, Boehme, Kevin L, Norton, Maria C, Tschanz, JoAnn T, Munger, Ronald G, Corcoran, Christopher D, Kauwe, John SK
Wydane 2014

Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

od Ellrott, Kyle, Bailey, Matthew H., Saksena, Gordon, Covington, Kyle R., Kandoth, Cyriac, Stewart, Chip, Hess, Julian, Ma, Singer, McLellan, Michael, Sofia, Heidi J., Hutter, Carolyn, Getz, Gad, Wheeler, David, Ding, Li
Wydane w Cell Syst (2018)

Mitochondrial genomic variation associated with higher mitochondrial copy number: the Cache County Study on Memory Health and Aging

od Ridge, Perry G, Maxwell, Taylor J, Foutz, Spencer J, Bailey, Matthew H, Corcoran, Christopher D, Tschanz, JoAnn T, Norton, Maria C, Munger, Ronald G, O'Brien, Elizabeth, Kerber, Richard A, Cawthon, Richard M, Kauwe, John SK
Wydane 2014

Pan-cancer analysis of somatic mutations across 21 neuroendocrine tumor types

od Cao, Yanan, Zhou, Weiwei, Li, Lin, Wang, Jiaqian, Gao, Zhibo, Jiang, Yiran, Jiang, Xiuli, Shan, Aijing, Bailey, Matthew H., Huang, Kuan-lin, Sun, Sam Q., McLellan, Michael D., Niu, Beifang, Wang, Weiqing, Ding, Li, Ning, Guang
Wydane w Cell Res (2018)

Discovery of driver non-coding splice-site-creating mutations in cancer

od Cao, Song, Zhou, Daniel Cui, Oh, Clara, Jayasinghe, Reyka G., Zhao, Yanyan, Yoon, Christopher J., Wyczalkowski, Matthew A., Bailey, Matthew H., Tsou, Terrence, Gao, Qingsong, Malone, Andrew, Reynolds, Sheila, Shmulevich, Ilya, Wendl, Michael C., Chen, Feng, Ding, Li
Wydane w Nat Commun (2020)

Interpreting pathways to discover cancer driver genes with Moonlight

od Colaprico, Antonio, Olsen, Catharina, Bailey, Matthew H., Odom, Gabriel J., Terkelsen, Thilde, Silva, Tiago C., Olsen, André V., Cantini, Laura, Zinovyev, Andrei, Barillot, Emmanuel, Noushmehr, Houtan, Bertoli, Gloria, Castiglioni, Isabella, Cava, Claudia, Bontempi, Gianluca, Chen, Xi Steven, Papaleo, Elena
Wydane w Nat Commun (2020)

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

od Bailey, Matthew H., Meyerson, William U., Dursi, Lewis Jonathan, Wang, Liang-Bo, Dong, Guanlan, Liang, Wen-Wei, Weerasinghe, Amila, Li, Shantao, Kelso, Sean, Saksena, Gordon, Ellrott, Kyle, Wendl, Michael C., Wheeler, David A., Getz, Gad, Simpson, Jared T., Gerstein, Mark B., Ding, Li
Wydane w Nat Commun (2020)

Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

od Bailey, Matthew H., Meyerson, William U., Dursi, Lewis Jonathan, Wang, Liang-Bo, Dong, Guanlan, Liang, Wen-Wei, Weerasinghe, Amila, Li, Shantao, Li, Yize, Kelso, Sean, Saksena, Gordon, Ellrott, Kyle, Wendl, Michael C., Wheeler, David A., Getz, Gad, Simpson, Jared T., Gerstein, Mark B., Ding, Li
Wydane w Nat Commun (2020)

Protein structure guided discovery of functional mutations across 19 cancer types

od Niu, Beifang, Scott, Adam D., Sengupta, Sohini, Bailey, Matthew H., Batra, Prag, Ning, Jie, Wyczalkowski, Matthew A., Liang, Wen-Wei, Zhang, Qunyuan, McLellan, Michael D., Sun, Sam Q., Tripathi, Piyush, Lou, Carolyn, Ye, Kai, Mashl, R. Jay, Wallis, John, Wendl, Michael C., Chen, Feng, Ding, Li
Wydane w Nat Genet (2016)

Genome-Wide Association Study of CSF Levels of 59 Alzheimer's Disease Candidate Proteins: Significant Associations with Proteins Involved in Amyloid Processing and Inflammation

od Kauwe, John S. K., Bailey, Matthew H., Ridge, Perry G., Perry, Rachel, Wadsworth, Mark E., Hoyt, Kaitlyn L., Staley, Lyndsay A., Karch, Celeste M., Harari, Oscar, Cruchaga, Carlos, Ainscough, Benjamin J., Bales, Kelly, Pickering, Eve H., Bertelsen, Sarah, Fagan, Anne M., Holtzman, David M., Morris, John C., Goate, Alison M.
Wydane 2014

Integrative omics analyses broaden treatment targets in human cancer

od Sengupta, Sohini, Sun, Sam Q., Huang, Kuan-lin, Oh, Clara, Bailey, Matthew H., Varghese, Rajees, Wyczalkowski, Matthew A., Ning, Jie, Tripathi, Piyush, McMichael, Joshua F., Johnson, Kimberly J., Kandoth, Cyriac, Welch, John, Ma, Cynthia, Wendl, Michael C., Payne, Samuel H., Fenyö, David, Townsend, Reid R., Dipersio, John F., Chen, Feng, Ding, Li
Wydane w Genome Med (2018)

Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

od Ding, Li, Bailey, Matthew H., Porta-Pardo, Eduard, Thorsson, Vesteinn, Colaprico, Antonio, Bertrand, Denis, Gibbs, David L., Weerasinghe, Amila, Huang, Kuan-lin, Tokheim, Collin, Cortés-Ciriano, Isidro, Jayasinghe, Reyka, Chen, Feng, Yu, Lihua, Sun, Sam, Olsen, Catharina, Kim, Jaegil, Taylor, Alison M., Cherniack, Andrew D., Akbani, Rehan, Suphavilai, Chayaporn, Nagarajan, Niranjan, Stuart, Josh M., Mills, Gordon B, Wyczalkowski, Matthew A., Vincent, Benjamin, Hutter, Carolyn M., Zenklusen, Jean Claude, Hoadley, Katherine A., Wendl, Michael C., Shmulevich, llya, Lazar, Alexander J., Wheeler, David, Getz, Gad
Wydane w Cell (2018)

Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas

od Knijnenburg, Theo A., Wang, Linghua, Zimmermann, Michael T., Chambwe, Nyasha, Gao, Galen F., Cherniack, Andrew D., Fan, Huihui, Shen, Hui, Way, Gregory P., Greene, Casey S., Liu, Yuexin, Akbani, Rehan, Feng, Bin, Donehower, Lawrence A., Miller, Chase, Shen, Yang, Karimi, Mostafa, Chen, Haoran, Kim, Pora, Jia, Peilin, Shinbrot, Eve, Zhang, Shaojun, Liu, Jianfang, Hu, Hai, Bailey, Matthew H., Yau, Christina, Wolf, Denise, Zhao, Zhongming, Weinstein, John N., Li, Lei, Ding, Li, Mills, Gordon B., Laird, Peter W., Wheeler, David A., Shmulevich, Ilya, Monnat, Raymond J, Xiao, Yonghong, Wang, Chen
Wydane w Cell Rep (2018)

Comprehensive Characterization of Cancer Driver Genes and Mutations

od Bailey, Matthew H., Tokheim, Collin, Porta-Pardo, Eduard, Sengupta, Sohini, Bertrand, Denis, Weerasinghe, Amila, Colaprico, Antonio, Wendl, Michael C., Kim, Jaegil, Reardon, Brendan, Ng, Kwok-Shing, Jeong, Kang Jin, Cao, Song, Wang, Zixing, Gao, JianJiong, Gao, Qingsong, Wang, Fang, Liu, Eric Minwei, Mularoni, Loris, Rubio-Perez, Carlota, Nagarajan, Niranjan, Cortés-Ciriano, Isidro, Zhou, Daniel Cui, Liang, Wen-Wei, Hess, Julian M., Yellapantula, Venkata D., Tamborero, David, Gonzalez-Perez, Abel, Suphavilai, Chayaporn, Ko, Jia Yu, Khurana, Ekta, Park, Peter J., Van Allen, Eliezer, Liang, Han, Lawrence, Michael, Godzik, Adam, Lopez-Bigas, Nuria, Stuart, Josh, Wheeler, David, Getz, Gad, Chen, Ken, Lazar, Alexander J., Mills, Gordon B, Karchin, Rachel, Ding, Li
Wydane w Cell (2018)

Comprehensive Characterization of Cancer Driver Genes and Mutations

od Bailey, Matthew H., Tokheim, Collin, Porta-Pardo, Eduard, Sengupta, Sohini, Bertrand, Denis, Weerasinghe, Amila, Colaprico, Antonio, Wendl, Michael C., Kim, Jaegil, Reardon, Brendan, Ng, Patrick Kwok-Shing, Jeong, Kang Jin, Cao, Song, Wang, Zixing, Gao, Jianjiong, Gao, Qingsong, Wang, Fang, Liu, Eric Minwei, Mularoni, Loris, Rubio-Perez, Carlota, Nagarajan, Niranjan, Cortés-Ciriano, Isidro, Zhou, Daniel Cui, Liang, Wen-Wei, Hess, Julian M., Yellapantula, Venkata D., Tamborero, David, Gonzalez-Perez, Abel, Suphavilai, Chayaporn, Ko, Jia Yu, Khurana, Ekta, Park, Peter J., Van Allen, Eliezer M., Liang, Han, Lawrence, Michael S., Godzik, Adam, Lopez-Bigas, Nuria, Stuart, Josh, Wheeler, David, Getz, Gad, Chen, Ken, Lazar, Alexander J., Mills, Gordon B., Karchin, Rachel, Ding, Li
Wydane w Cell (2018)

Oncogenic Signaling Pathways in The Cancer Genome Atlas

od Sanchez-Vega, Francisco, Mina, Marco, Armenia, Joshua, Chatila, Walid K., Luna, Augustin, La, Konnor C., Dimitriadoy, Sofia, Liu, David L., Kantheti, Havish S., Saghafinia, Sadegh, Chakravarty, Debyani, Daian, Foysal, Gao, Qingsong, Bailey, Matthew H., Liang, Wen-Wei, Foltz, Steven M., Shmulevich, Ilya, Ding, Li, Heins, Zachary, Ochoa, Angelica, Gross, Benjamin, Gao, Jianjiong, Zhang, Hongxin, Kundra, Ritika, Kandoth, Cyriac, Bahceci, Istemi, Dervishi, Leonard, Dogrusoz, Ugur, Zhou, Wanding, Shen, Hui, Laird, Peter W., Way, Gregory P., Greene, Casey S., Liang, Han, Xiao, Yonghong, Wang, Chen, Iavarone, Antonio, Berger, Alice H., Bivona, Trever G., Lazar, Alexander J., Hammer, Gary D., Giordano, Thomas, Kwong, Lawrence N., McArthur, Grant, Huang, Chenfei, Tward, Aaron D., Frederick, Mitchell J., McCormick, Frank, Meyerson, Matthew, Van Allen, Eliezer M., Cherniack, Andrew D., Ciriello, Giovanni, Sander, Chris, Schultz, Nikolaus
Wydane w Cell (2018)

Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts

od Woo, Xing Yi, Giordano, Jessica, Srivastava, Anuj, Zhao, Zi-Ming, Lloyd, Michael W., de Bruijn, Roebi, Suh, Yun-Suhk, Patidar, Rajesh, Chen, Li, Scherer, Sandra, Bailey, Matthew H., Yang, Chieh-Hsiang, Cortes-Sanchez, Emilio, Xi, Yuanxin, Wang, Jing, Wickramasinghe, Jayamanna, Kossenkov, Andrew V., Rebecca, Vito W., Sun, Hua, Mashl, R. Jay, Davies, Sherri R., Jeon, Ryan, Frech, Christian, Randjelovic, Jelena, Rosains, Jacqueline, Galimi, Francesco, Bertotti, Andrea, Lafferty, Adam, O’Farrell, Alice C., Modave, Elodie, Lambrechts, Diether, ter Brugge, Petra, Serra, Violeta, Marangoni, Elisabetta, El Botty, Rania, Kim, Hyunsoo, Kim, Jong-Il, Yang, Han-Kwang, Lee, Charles, Dean, Dennis A., Davis-Dusenbery, Brandi, Evrard, Yvonne A., Doroshow, James H., Welm, Alana L., Welm, Bryan E., Lewis, Michael T., Fang, Bingliang, Roth, Jack A., Meric-Bernstam, Funda, Herlyn, Meenhard, Davies, Michael A., Ding, Li, Li, Shunqiang, Govindan, Ramaswamy, Isella, Claudio, Moscow, Jeffrey A., Trusolino, Livio, Byrne, Annette T., Jonkers, Jos, Bult, Carol J., Medico, Enzo, Chuang, Jeffrey H.
Wydane w Nat Genet (2021)