Systems biology of innate immunity

Por Zak, Daniel E., Aderem, Alan
Publicado em 2009

A systems view of host defense

Por Zak, Daniel E, Aderem, Alan
Publicado em 2009

Systems-Level Analysis of Innate Immunity

Por Zak, Daniel E., Tam, Vincent C., Aderem, Alan
Publicado em 2014

Importance of Input Perturbations and Stochastic Gene Expression in the Reverse Engineering of Genetic Regulatory Networks: Insights From an Identifiability Analysis of an In Silic...

Por Zak, Daniel E., Gonye, Gregory E., Schwaber, James S., Doyle, Francis J.
Publicado em 2003

Modeling the VPAC(2)-Activated cAMP/PKA Signaling Pathway: From Receptor to Circadian Clock Gene Induction

Por Hao, Haiping, Zak, Daniel E., Sauter, Thomas, Schwaber, James, Ogunnaike, Babatunde A.
Publicado em 2006

Mouse NAIP1 detects the type III secretion system needle protein

Por Rayamajhi, Manira, Zak, Daniel E., Chavarria-Smith, Joseph, Vance, Russell E., Miao, Edward A.
Publicado em 2013

Systems analysis of circadian time-dependent neuronal epidermal growth factor receptor signaling

Por Zak, Daniel E, Hao, Haiping, Vadigepalli, Rajanikanth, Miller, Gregory M, Ogunnaike, Babatunde A, Schwaber, James S
Publicado em 2006

Quantifying gene network connectivity in silico: Scalability and accuracy of a modular approach

Por Yalamanchili, Nirupama, Zak, Daniel E., Ogunnaike, Babatunde A., Schwaber, James S., Kriete, Andres, Kholodenko, Boris N.
Publicado em 2006

Role of the transcription factor C/EBPδ in a regulatory circuit that discriminates between transient and persistent Toll-like receptor 4-induced signals

Por Litvak, Vladimir, Ramsey, Stephen A., Rust, Alistair G., Zak, Daniel E., Kennedy, Kathleen A., Lampano, Aaron E., Nykter, Matti, Shmulevich, Ilya, Aderem, Alan
Publicado em 2009

Caspase-11 protects against bacteria that escape the vacuole

Por Aachoui, Youssef, Leaf, Irina A., Hagar, Jon A., Fontana, Mary F., Campos, Cristine G., Zak, Daniel E., Tan, Michael H., Cotter, Peggy A., Vance, Russell E., Aderem, Alan, Miao, Edward A.
Publicado em 2013

Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites

Por Ramsey, Stephen A., Knijnenburg, Theo A., Kennedy, Kathleen A., Zak, Daniel E., Gilchrist, Mark, Gold, Elizabeth S., Johnson, Carrie D., Lampano, Aaron E., Litvak, Vladimir, Navarro, Garnet, Stolyar, Tetyana, Aderem, Alan, Shmulevich, Ilya
Publicado em 2010

The Innate Immune Database (IIDB)

Por Zak Daniel, Gilchrist Mark, Rosenberger Carrie M, Roach Jared C, Kennedy Kathleen A, Hwang Daehee, Li Bin, Battail Christophe, Thorsson Vesteinn, Rust Alistair G, Korb Martin, Johnson Carrie, Marzolf Bruz, Aderem Alan, Shmulevich Ilya, Bolouri Hamid
Publicado em 2008-03-01

The Innate Immune Database (IIDB)

Por Korb, Martin, Rust, Aistair G, Thorsson, Vesteinn, Battail, Christophe, Li, Bin, Hwang, Daehee, Kennedy, Kathleen A, Roach, Jared C, Rosenberger, Carrie M, Gilchrist, Mark, Zak, Daniel, Johnson, Carrie, Marzolf, Bruz, Aderem, Alan, Shmulevich, Ilya, Bolouri, Hamid
Publicado em 2008

Memory T Cell RNA Rearrangement Programmed by Heterogeneous Nuclear Ribonucleoprotein hnRNPLL

Por Wu, Zuopeng, Jia, Xinying, de la Cruz, Laura, Su, Xun-Cheng, Marzolf, Bruz, Troisch, Pamela, Zak, Daniel, Hamilton, Adam, Whittle, Belinda, Yu, Di, Sheahan, Daniel, Bertram, Edward, Aderem, Alan, Otting, Gottfried, Goodnow, Christopher C., Hoyne, Gerard F.
Publicado em 2008

Systems biology of immunity to MF59-adjuvanted versus nonadjuvanted trivalent seasonal influenza vaccines in early childhood

Por Nakaya, Helder I., Clutterbuck, Elizabeth, Kazmin, Dmitri, Wang, Lili, Cortese, Mario, Bosinger, Steven E., Patel, Nirav B., Zak, Daniel E., Aderem, Alan, Dong, Tao, Del Giudice, Giuseppe, Rappuoli, Rino, Cerundolo, Vincenzo, Pollard, Andrew J., Pulendran, Bali, Siegrist, Claire-Anne
Publicado no Proc Natl Acad Sci U S A (2016)

Host blood RNA signatures predict the outcome of tuberculosis treatment

Por Thompson, Ethan G., Du, Ying, Malherbe, Stephanus T., Shankar, Smitha, Braun, Jackie, Valvo, Joe, Ronacher, Katharina, Tromp, Gerard, Tabb, David L., Alland, David, Shenai, Shubhada, Via, Laura E., Warwick, James, Aderem, Alan, Scriba, Thomas J., Winter, Jill, Walzl, Gerhard, Zak, Daniel E.
Publicado no Tuberculosis (Edinb) (2017)

Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics

Por Ramsey, Stephen A., Klemm, Sandy L., Zak, Daniel E., Kennedy, Kathleen A., Thorsson, Vesteinn, Li, Bin, Gilchrist, Mark, Gold, Elizabeth S., Johnson, Carrie D., Litvak, Vladimir, Navarro, Garnet, Roach, Jared C., Rosenberger, Carrie M., Rust, Alistair G., Yudkovsky, Natalya, Aderem, Alan, Shmulevich, Ilya
Publicado em 2008

Correction: Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics

Por Ramsey, Stephen A., Klemm, Sandy L., Zak, Daniel E., Kennedy, Kathleen A., Thorsson, Vesteinn, Li, Bin, Gilchrist, Mark, Gold, Elizabeth S., Johnson, Carrie D., Litvak, Vladimir, Navarro, Garnet, Roach, Jared C., Rosenberger, Carrie M., Rust, Alistair G., Yudkovsky, Natalya, Aderem, Alan, Shmulevich, Ilya
Publicado em 2008

Correction: Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics

Por Ramsey, Stephen A., Klemm, Sandy L., Zak, Daniel E., Kennedy, Kathleen A., Thorsson, Vesteinn, Li, Bin, Gilchrist, Mark, Gold, Elizabeth S., Johnson, Carrie D., Litvak, Vladimir, Navarro, Garnet, Roach, Jared C., Rosenberger, Carrie M., Rust, Alistair G., Yudkovsky, Natalya, Aderem, Alan, Shmulevich, Ilya
Publicado em 2008

Systems analysis identifies an essential role for SHANK-associated RH domain-interacting protein (SHARPIN) in macrophage Toll-like receptor 2 (TLR2) responses

Por Zak, Daniel E., Schmitz, Frank, Gold, Elizabeth S., Diercks, Alan H., Peschon, Jacques J., Valvo, Joe S., Niemistö, Antti, Podolsky, Irina, Fallen, Shannon G., Suen, Rosa, Stolyar, Tetyana, Johnson, Carrie D., Kennedy, Kathleen A., Hamilton, M. Kristina, Siggs, Owen M., Beutler, Bruce, Aderem, Alan
Publicado em 2011