An Empirical Prior Improves Accuracy for Bayesian Estimation of Transcription Factor Binding Site Frequencies within Gene Promoters

Por Ramsey, Stephen A.
Publicado no Bioinform Biol Insights (2016)

A DNA shape-based regulatory score improves position-weight matrix-based recognition of transcription factor binding sites

Por Yang, Jichen, Ramsey, Stephen A.
Publicado no Bioinformatics (2015)

Identifying Cell Type-Specific Transcription Factors by Integrating ChIP-seq and eQTL Data–Application to Monocyte Gene Regulation

Por Choudhury, Mudra, Ramsey, Stephen A.
Publicado no Gene Regul Syst Bio (2016)

Dependence of the signal amplification potential of colloidal gold nanoparticles on resonance wavelength in surface plasmon resonance-based detection

Por Fu, Elain, Ramsey, Stephen A., Yager, Paul
Publicado em 2007

A systems biology approach to understanding atherosclerosis

Por Ramsey, Stephen A, Gold, Elizabeth S, Aderem, Alan
Publicado em 2010

Mathematical Modeling of Biomolecular Network Dynamics

Por Ratushny, Alexander V., Ramsey, Stephen A., Aitchison, John D.
Publicado no Methods Mol Biol (2011)

Transport in two-dimensional paper networks

Por Fu, Elain, Ramsey, Stephen A., Kauffman, Peter, Lutz, Barry, Yager, Paul
Publicado em 2011

Control of Signaling in a MAP-kinase Pathway by an RNA-Binding Protein

Por Prinz, Susanne, Aldridge, Christine, Ramsey, Stephen A., Taylor, R. James, Galitski, Timothy
Publicado em 2007

Asymmetric positive feedback loops reliably control biological responses

Por Ratushny, Alexander V, Saleem, Ramsey A, Sitko, Katherine, Ramsey, Stephen A, Aitchison, John D
Publicado em 2012

Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists

Por Dong, Xiaoxi, Yambartsev, Anatoly, Ramsey, Stephen A, Thomas, Lina D, Shulzhenko, Natalia, Morgun, Andrey
Publicado no Bioinform Biol Insights (2015)

Enhanced sensitivity of lateral flow tests using a two-dimensional paper network format

Por Fu, Elain, Liang, Tinny, Houghtaling, Jared, Ramachandran, Sujatha, Ramsey, Stephen A., Lutz, Barry, Yager, Paul
Publicado em 2011

An LXR–NCOA5 gene regulatory complex directs inflammatory crosstalk-dependent repression of macrophage cholesterol efflux

Por Gillespie, Mark A, Gold, Elizabeth S, Ramsey, Stephen A, Podolsky, Irina, Aderem, Alan, Ranish, Jeffrey A
Publicado no EMBO J (2015)

Resonance wavelength-dependent signal of absorptive particles in surface plasmon resonance-based detection

Por Fu, Elain, Ramsey, Stephen A., Chen, Jingyi, Chinowsky, Timothy M., Wiley, Benjamin, Xia, Younan, Yager, Paul
Publicado em 2007

Control of Transcriptional Variability by Overlapping Feed-Forward Regulatory Motifs

Por Ratushny, Alexander V., Ramsey, Stephen A., Roda, Oriol, Wan, Yakun, Smith, Jennifer J., Aitchison, John D.
Publicado em 2008

ATF3, an adaptive-response gene, enhances TGFβ signaling and cancer-initiating cell features in breast cancer cells

Por Yin, Xin, Wolford, Christopher C., Chang, Yi-Seok, McConoughey, Stephen J., Ramsey, Stephen A., Aderem, Alan, Hai, Tsonwin
Publicado em 2010

Epigenome-Guided Analysis of the Transcriptome of Plaque Macrophages during Atherosclerosis Regression Reveals Activation of the Wnt Signaling Pathway

Por Ramsey, Stephen A., Vengrenyuk, Yuliya, Menon, Prashanthi, Podolsky, Irina, Feig, Jonathan E., Aderem, Alan, Fisher, Edward A., Gold, Elizabeth S.
Publicado no PLoS Genet (2014)

ATF3 protects against atherosclerosis by suppressing 25-hydroxycholesterol–induced lipid body formation

Por Gold, Elizabeth S., Ramsey, Stephen A., Sartain, Mark J., Selinummi, Jyrki, Podolsky, Irina, Rodriguez, David J., Moritz, Robert L., Aderem, Alan
Publicado em 2012

Urokinase Plasminogen Activator Induces Pro-Fibrotic/M2 Phenotype in Murine Cardiac Macrophages

Por Meznarich, Jessica, Malchodi, Laura, Helterline, Deri, Ramsey, Stephen A., Bertko, Kate, Plummer, Tabitha, Plawman, Abigail, Gold, Elizabeth, Stempien-Otero, April
Publicado em 2013

Transcriptional responses to fatty acid are coordinated by combinatorial control

Por Smith, Jennifer J, Ramsey, Stephen A, Marelli, Marcello, Marzolf, Bruz, Hwang, Daehee, Saleem, Ramsey A, Rachubinski, Richard A, Aitchison, John D
Publicado em 2007

Gene expression dynamics in the macrophage exhibit criticality

Por Nykter, Matti, Price, Nathan D., Aldana, Maximino, Ramsey, Stephen A., Kauffman, Stuart A., Hood, Leroy E., Yli-Harja, Olli, Shmulevich, Ilya
Publicado em 2008