An Empirical Prior Improves Accuracy for Bayesian Estimation of Transcription Factor Binding Site Frequencies within Gene Promoters

Tekijä Ramsey, Stephen A.
Julkaisussa Bioinform Biol Insights (2016)

A DNA shape-based regulatory score improves position-weight matrix-based recognition of transcription factor binding sites

Tekijä Yang, Jichen, Ramsey, Stephen A.
Julkaisussa Bioinformatics (2015)

Identifying Cell Type-Specific Transcription Factors by Integrating ChIP-seq and eQTL Data–Application to Monocyte Gene Regulation

Tekijä Choudhury, Mudra, Ramsey, Stephen A.
Julkaisussa Gene Regul Syst Bio (2016)

CERENKOV3: Clustering and molecular network-derived features improve computational prediction of functional noncoding SNPs

Tekijä Yao, Yao, Ramsey, Stephen A.
Julkaisussa Pac Symp Biocomput (2020)

A computational systems biology approach for identifying candidate drugs for repositioning for cardiovascular disease

Tekijä Yu, Alvin Z., Ramsey, Stephen A.
Julkaisussa Interdiscip Sci (2016)

Dependence of the signal amplification potential of colloidal gold nanoparticles on resonance wavelength in surface plasmon resonance-based detection

Tekijä Fu, Elain, Ramsey, Stephen A., Yager, Paul
Julkaistu 2007

A systems biology approach to understanding atherosclerosis

Tekijä Ramsey, Stephen A, Gold, Elizabeth S, Aderem, Alan
Julkaistu 2010

Voting-based integration algorithm improves causal network learning from interventional and observational data: An application to cell signaling network inference

Tekijä Sinha, Meghamala, Tadepalli, Prasad, Ramsey, Stephen A.
Julkaisussa PLoS One (2021)

Mathematical Modeling of Biomolecular Network Dynamics

Tekijä Ratushny, Alexander V., Ramsey, Stephen A., Aitchison, John D.
Julkaisussa Methods Mol Biol (2011)

CERENKOV2: improved detection of functional noncoding SNPs using data-space geometric features

Tekijä Yao, Yao, Liu, Zheng, Wei, Qi, Ramsey, Stephen A.
Julkaisussa BMC Bioinformatics (2019)

Transport in two-dimensional paper networks

Tekijä Fu, Elain, Ramsey, Stephen A., Kauffman, Peter, Lutz, Barry, Yager, Paul
Julkaistu 2011

Control of Signaling in a MAP-kinase Pathway by an RNA-Binding Protein

Tekijä Prinz, Susanne, Aldridge, Christine, Ramsey, Stephen A., Taylor, R. James, Galitski, Timothy
Julkaistu 2007

Investigation of reagent delivery formats in a multivalent malaria sandwich immunoassay and implications for assay performance

Tekijä Liang, Tinny, Robinson, Robert, Houghtaling, Jared, Fridley, Gina, Ramsey, Stephen A., Fu, Elain
Julkaisussa Anal Chem (2016)

Vitamin E Deficiency Disrupts Gene Expression Networks during Zebrafish Development

Tekijä Head, Brian, Ramsey, Stephen A., Kioussi, Chrissa, Tanguay, Robyn L., Traber, Maret G.
Julkaisussa Nutrients (2021)

Asymmetric positive feedback loops reliably control biological responses

Tekijä Ratushny, Alexander V, Saleem, Ramsey A, Sitko, Katherine, Ramsey, Stephen A, Aitchison, John D
Julkaistu 2012

Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists

Tekijä Dong, Xiaoxi, Yambartsev, Anatoly, Ramsey, Stephen A, Thomas, Lina D, Shulzhenko, Natalia, Morgun, Andrey
Julkaisussa Bioinform Biol Insights (2015)

Enhanced sensitivity of lateral flow tests using a two-dimensional paper network format

Tekijä Fu, Elain, Liang, Tinny, Houghtaling, Jared, Ramachandran, Sujatha, Ramsey, Stephen A., Lutz, Barry, Yager, Paul
Julkaistu 2011

An LXR–NCOA5 gene regulatory complex directs inflammatory crosstalk-dependent repression of macrophage cholesterol efflux

Tekijä Gillespie, Mark A, Gold, Elizabeth S, Ramsey, Stephen A, Podolsky, Irina, Aderem, Alan, Ranish, Jeffrey A
Julkaisussa EMBO J (2015)

Resonance wavelength-dependent signal of absorptive particles in surface plasmon resonance-based detection

Tekijä Fu, Elain, Ramsey, Stephen A., Chen, Jingyi, Chinowsky, Timothy M., Wiley, Benjamin, Xia, Younan, Yager, Paul
Julkaistu 2007

Control of Transcriptional Variability by Overlapping Feed-Forward Regulatory Motifs

Tekijä Ratushny, Alexander V., Ramsey, Stephen A., Roda, Oriol, Wan, Yakun, Smith, Jennifer J., Aitchison, John D.
Julkaistu 2008