Reannotation of the CELO genome characterizes a set of previously unassigned open reading frames and points to novel modes of host interaction in avian adenoviruses

Por Washietl, Stefan, Eisenhaber, Frank
Publicado em 2003

Dinucleotide controlled null models for comparative RNA gene prediction

Por Gesell, Tanja, Washietl, Stefan
Publicado em 2008

Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals

Por Washietl, Stefan, Kellis, Manolis, Garber, Manuel
Publicado em 2014

Protein prenyltransferases

Por Maurer-Stroh, Sebastian, Washietl, Stefan, Eisenhaber, Frank
Publicado em 2003

A benchmark of multiple sequence alignment programs upon structural RNAs

Por Gardner, Paul P., Wilm, Andreas, Washietl, Stefan
Publicado em 2005

Fast and reliable prediction of noncoding RNAs

Por Washietl, Stefan, Hofacker, Ivo L., Stadler, Peter F.
Publicado em 2005

The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures

Por Gruber, Andreas R., Neuböck, Richard, Hofacker, Ivo L., Washietl, Stefan
Publicado em 2007

RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction

Por Washietl, Stefan, Hofacker, Ivo L., Stadler, Peter F., Kellis, Manolis
Publicado em 2012

Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

Por Rouskin, Silvi, Zubradt, Meghan, Washietl, Stefan, Kellis, Manolis, Weissman, Jonathan S.
Publicado em 2013

Strategies for measuring evolutionary conservation of RNA secondary structures

Por Gruber, Andreas R, Bernhart, Stephan H, Hofacker, Ivo L, Washietl, Stefan
Publicado em 2008

Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes

Por Lin, Michael F., Kheradpour, Pouya, Washietl, Stefan, Parker, Brian J., Pedersen, Jakob S., Kellis, Manolis
Publicado em 2011

Computational Analysis of Noncoding RNAs

Por Washietl, Stefan, Will, Sebastian, Hendrix, David A., Goff, Loyal A., Rinn, John L., Berger, Bonnie, Kellis, Manolis
Publicado em 2012

Computational RNomics of Drosophilids

Por Hertel Jana, Reiche Kristin, Washietl Stefan, Hackermüller Jörg, Rose Dominic, Findeiß Sven, Stadler Peter F, Prohaska Sonja J
Publicado em 2007-11-01

Computational RNomics of Drosophilids

Por Rose, Dominic, Hackermüller, Jörg, Washietl, Stefan, Reiche, Kristin, Hertel, Jana, Findeiß, Sven, Stadler, Peter F, Prohaska, Sonja J
Publicado em 2007

New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes

Por Parker, Brian J., Moltke, Ida, Roth, Adam, Washietl, Stefan, Wen, Jiayu, Kellis, Manolis, Breaker, Ronald, Pedersen, Jakob Skou
Publicado em 2011

Optimization of parameters for coverage of low molecular weight proteins

Por Müller, Stephan A., Kohajda, Tibor, Findeiß, Sven, Stadler, Peter F., Washietl, Stefan, Kellis, Manolis, von Bergen, Martin, Kalkhof, Stefan
Publicado em 2010

RNAcode: Robust discrimination of coding and noncoding regions in comparative sequence data

Por Washietl, Stefan, Findeiß, Sven, Müller, Stephan A., Kalkhof, Stefan, von Bergen, Martin, Hofacker, Ivo L., Stadler, Peter F., Goldman, Nick
Publicado em 2011

miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes

Por Hsu, Paul W.C., Huang, Hsien-Da, Hsu, Sheng-Da, Lin, Li-Zen, Tsou, Ann-Ping, Tseng, Ching-Ping, Stadler, Peter F., Washietl, Stefan, Hofacker, Ivo L.
Publicado em 2006

Structured RNAs in the ENCODE selected regions of the human genome

Por Washietl, Stefan, Pedersen, Jakob S., Korbel, Jan O., Stocsits, Claudia, Gruber, Andreas R., Hackermüller, Jörg, Hertel, Jana, Lindemeyer, Manja, Reiche, Kristin, Tanzer, Andrea, Ucla, Catherine, Wyss, Carine, Antonarakis, Stylianos E., Denoeud, France, Lagarde, Julien, Drenkow, Jorg, Kapranov, Philipp, Gingeras, Thomas R., Guigó, Roderic, Snyder, Michael, Gerstein, Mark B., Reymond, Alexandre, Hofacker, Ivo L., Stadler, Peter F.
Publicado em 2007

A high-resolution map of human evolutionary constraint using 29 mammals

Por Lindblad-Toh, Kerstin, Garber, Manuel, Zuk, Or, Lin, Michael F., Parker, Brian J., Washietl, Stefan, Kheradpour, Pouya, Ernst, Jason, Jordan, Gregory, Mauceli, Evan, Ward, Lucas D., Lowe, Craig B., Holloway, Alisha K., Clamp, Michele, Gnerre, Sante, Alfoldi, Jessica, Beal, Kathryn, Chang, Jean, Clawson, Hiram, Cuff, James, Di Palma, Federica, Fitzgerald, Stephen, Flicek, Paul, Guttman, Mitchell, Hubisz, Melissa J, Jaffe, David B., Jungreis, Irwin, Kent, W James, Kostka, Dennis, Lara, Marcia, Martins, Andre L, Massingham, Tim, Moltke, Ida, Raney, Brian J., Rasmussen, Matthew D., Robinson, Jim, Stark, Alexander, Vilella, Albert J., Wen, Jiayu, Xie, Xiaohui, Zody, Michael C., Worley, Kim C., Kovar, Christie L., Muzny, Donna M., Gibbs, Richard A., Warren, Wesley C., Mardis, Elaine R, Weinstock, George M., Wilson, Richard K., Birney, Ewan, Margulies, Elliott H., Herrero, Javier, Green, Eric D., Haussler, David, Siepel, Adam, Goldman, Nick, Pollard, Katherine S., Pedersen, Jakob S., Lander, Eric S., Kellis, Manolis
Publicado em 2011