The Expansion of Animal MicroRNA Families Revisited

le Hertel, Jana, Stadler, Peter F.
Foilsithe in Life (Basel) (2015)

U6 snRNA intron insertion occurred multiple times during fungi evolution

le Canzler, Sebastian, Stadler, Peter F., Hertel, Jana
Foilsithe in RNA Biol (2016)

Evolution of Fungal U3 snoRNAs: Structural Variation and Introns

le Canzler, Sebastian, Stadler, Peter F., Hertel, Jana
Foilsithe in Noncoding RNA (2017)

Towards a Consistent, Quantitative Evaluation of MicroRNA Evolution

le Yazbeck, Ali M., Tout, Kifah R., Stadler, Peter F., Hertel, Jana
Foilsithe in J Integr Bioinform (2017)

Accurate and efficient reconstruction of deep phylogenies from structured RNAs

le Stocsits, Roman R., Letsch, Harald, Hertel, Jana, Misof, Bernhard, Stadler, Peter F.
Foilsithe 2009

Phylogenetic distribution of plant snoRNA families

le Patra Bhattacharya, Deblina, Canzler, Sebastian, Kehr, Stephanie, Hertel, Jana, Grosse, Ivo, Stadler, Peter F.
Foilsithe in BMC Genomics (2016)

Evolution of the let-7 microRNA Family

le Hertel, Jana, Bartschat, Sebastian, Wintsche, Axel, Otto, Christian, of the Bioinformatics Computer Lab, The Students, Stadler, Peter F.
Foilsithe 2012

Computational RNomics of Drosophilids

le Hertel Jana, Reiche Kristin, Washietl Stefan, Hackermüller Jörg, Rose Dominic, Findeiß Sven, Stadler Peter F, Prohaska Sonja J
Foilsithe 2007-11-01

The expansion of the metazoan microRNA repertoire

le Hertel, Jana, Lindemeyer, Manuela, Missal, Kristin, Fried, Claudia, Tanzer, Andrea, Flamm, Christoph, Hofacker, Ivo L, Stadler, Peter F
Foilsithe 2006

Computational RNomics of Drosophilids

le Rose, Dominic, Hackermüller, Jörg, Washietl, Stefan, Reiche, Kristin, Hertel, Jana, Findeiß, Sven, Stadler, Peter F, Prohaska, Sonja J
Foilsithe 2007

Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis

le Jöchl, Christoph, Rederstorff, Mathieu, Hertel, Jana, Stadler, Peter F., Hofacker, Ivo L., Schrettl, Markus, Haas, Hubertus, Hüttenhofer, Alexander
Foilsithe 2008

Non-coding RNA annotation of the genome of Trichoplax adhaerens

le Hertel, Jana, de Jong, Danielle, Marz, Manja, Rose, Dominic, Tafer, Hakim, Tanzer, Andrea, Schierwater, Bernd, Stadler, Peter F.
Foilsithe 2009

An updated human snoRNAome

le Jorjani, Hadi, Kehr, Stephanie, Jedlinski, Dominik J., Gumienny, Rafal, Hertel, Jana, Stadler, Peter F., Zavolan, Mihaela, Gruber, Andreas R.
Foilsithe in Nucleic Acids Res (2016)

SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification

le de Araujo Oliveira, João Victor, Costa, Fabrizio, Backofen, Rolf, Stadler, Peter Florian, Machado Telles Walter, Maria Emília, Hertel, Jana
Foilsithe in BMC Bioinformatics (2016)

Homology-based annotation of non-coding RNAs in the genomes of Schistosoma mansoni and Schistosoma japonicum

le Copeland, Claudia S, Marz, Manja, Rose, Dominic, Hertel, Jana, Brindley, Paul J, Santana, Clara Bermudez, Kehr, Stephanie, Attolini, Camille Stephan-Otto, Stadler, Peter F
Foilsithe 2009

Conservation and Losses of Non-Coding RNAs in Avian Genomes

le Gardner, Paul P., Fasold, Mario, Burge, Sarah W., Ninova, Maria, Hertel, Jana, Kehr, Stephanie, Steeves, Tammy E., Griffiths-Jones, Sam, Stadler, Peter F.
Foilsithe in PLoS One (2015)

Structured RNAs in the ENCODE selected regions of the human genome

le Washietl, Stefan, Pedersen, Jakob S., Korbel, Jan O., Stocsits, Claudia, Gruber, Andreas R., Hackermüller, Jörg, Hertel, Jana, Lindemeyer, Manja, Reiche, Kristin, Tanzer, Andrea, Ucla, Catherine, Wyss, Carine, Antonarakis, Stylianos E., Denoeud, France, Lagarde, Julien, Drenkow, Jorg, Kapranov, Philipp, Gingeras, Thomas R., Guigó, Roderic, Snyder, Michael, Gerstein, Mark B., Reymond, Alexandre, Hofacker, Ivo L., Stadler, Peter F.
Foilsithe 2007

The spotted gar genome illuminates vertebrate evolution and facilitates human-to-teleost comparisons

le Braasch, Ingo, Gehrke, Andrew R., Smith, Jeramiah J., Kawasaki, Kazuhiko, Manousaki, Tereza, Pasquier, Jeremy, Amores, Angel, Desvignes, Thomas, Batzel, Peter, Catchen, Julian, Berlin, Aaron M., Campbell, Michael S., Barrell, Daniel, Martin, Kyle J., Mulley, John F., Ravi, Vydianathan, Lee, Alison P., Nakamura, Tetsuya, Chalopin, Domitille, Fan, Shaohua, Wcisel, Dustin, Cañestro, Cristian, Sydes, Jason, Beaudry, Felix E. G., Sun, Yi, Hertel, Jana, Beam, Michael J., Fasold, Mario, Ishiyama, Mikio, Johnson, Jeremy, Kehr, Steffi, Lara, Marcia, Letaw, John H., Litman, Gary W., Litman, Ronda T., Mikami, Masato, Ota, Tatsuya, Saha, Nil Ratan, Williams, Louise, Stadler, Peter F., Wang, Han, Taylor, John S., Fontenot, Quenton, Ferrara, Allyse, Searle, Stephen M. J., Aken, Bronwen, Yandell, Mark, Schneider, Igor, Yoder, Jeffrey A., Volff, Jean-Nicolas, Meyer, Axel, Amemiya, Chris T., Venkatesh, Byrappa, Holland, Peter W. H., Guiguen, Yann, Bobe, Julien, Shubin, Neil H., Di Palma, Federica, Alföldi, Jessica, Lindblad-Toh, Kerstin, Postlethwait, John H.
Foilsithe in Nat Genet (2016)