RNAstrand: reading direction of structured RNAs in multiple sequence alignments

Por Reiche, Kristin, Stadler, Peter F
Publicado em 2007

The Transcriptome of the Zebrafish Embryo After Chemical Exposure: A Meta-Analysis

Por Schüttler, Andreas, Reiche, Kristin, Altenburger, Rolf, Busch, Wibke
Publicado no Toxicol Sci (2017)

Inferring Noncoding RNA Families and Classes by Means of Genome-Scale Structure-Based Clustering

Por Will, Sebastian, Reiche, Kristin, Hofacker, Ivo L, Stadler, Peter F, Backofen, Rolf
Publicado em 2007

Comparison of splice sites reveals that long noncoding RNAs are evolutionarily well conserved

Por Nitsche, Anne, Rose, Dominic, Fasold, Mario, Reiche, Kristin, Stadler, Peter F.
Publicado no RNA (2015)

Deletion analysis of the 3′ long terminal repeat sequence of plant retrotransposon Tto1 identifies 125 base pairs redundancy as sufficient for first strand transfer

Por Tramontano, Andrea, Donath, Alexander, Bernhart, Stephan H., Reiche, Kristin, Böhmdorfer, Gudrun, Stadler, Peter F., Bachmair, Andreas
Publicado em 2011

uap: reproducible and robust HTS data analysis

Por Kämpf, Christoph, Specht, Michael, Scholz, Alexander, Puppel, Sven-Holger, Doose, Gero, Reiche, Kristin, Schor, Jana, Hackermüller, Jörg
Publicado no BMC Bioinformatics (2019)

Computational RNomics of Drosophilids

Por Hertel Jana, Reiche Kristin, Washietl Stefan, Hackermüller Jörg, Rose Dominic, Findeiß Sven, Stadler Peter F, Prohaska Sonja J
Publicado em 2007-11-01

Computational RNomics of Drosophilids

Por Rose, Dominic, Hackermüller, Jörg, Washietl, Stefan, Reiche, Kristin, Hertel, Jana, Findeiß, Sven, Stadler, Peter F, Prohaska, Sonja J
Publicado em 2007

Map and model—moving from observation to prediction in toxicogenomics

Por Schüttler, Andreas, Altenburger, Rolf, Ammar, Madeleine, Bader-Blukott, Marcella, Jakobs, Gianina, Knapp, Johanna, Krüger, Janet, Reiche, Kristin, Wu, Gi-Mick, Busch, Wibke
Publicado no Gigascience (2019)

STAT3-induced long noncoding RNAs in multiple myeloma cells display different properties in cancer

Por Binder, Stefanie, Hösler, Nadine, Riedel, Diana, Zipfel, Ivonne, Buschmann, Tilo, Kämpf, Christoph, Reiche, Kristin, Burger, Renate, Gramatzki, Martin, Hackermüller, Jörg, Stadler, Peter F., Horn, Friedemann
Publicado no Sci Rep (2017)

Master and servant: LINC00152 – a STAT3-induced long noncoding RNA regulates STAT3 in a positive feedback in human multiple myeloma

Por Binder, Stefanie, Zipfel, Ivonne, Friedrich, Maik, Riedel, Diana, Ende, Stefanie, Kämpf, Christoph, Wiedemann, Karolin, Buschmann, Tilo, Puppel, Sven-Holger, Reiche, Kristin, Stadler, Peter F., Horn, Friedemann
Publicado no BMC Med Genomics (2020)

Long Non-Coding RNAs Differentially Expressed between Normal versus Primary Breast Tumor Tissues Disclose Converse Changes to Breast Cancer-Related Protein-Coding Genes

Por Reiche, Kristin, Kasack, Katharina, Schreiber, Stephan, Lüders, Torben, Due, Eldri U., Naume, Bjørn, Riis, Margit, Kristensen, Vessela N., Horn, Friedemann, Børresen-Dale, Anne-Lise, Hackermüller, Jörg, Baumbusch, Lars O.
Publicado em 2014

Deep sequencing and automated histochemistry of human tissue slice cultures improve their usability as preclinical model for cancer research

Por Haehnel, Susann, Reiche, Kristin, Loeffler, Dennis, Horn, Andreas, Blumert, Conny, Puppel, Sven-Holger, Kaiser, Nicole, Rapp, Felicitas, Rade, Michael, Horn, Friedemann, Meixensberger, Juergen, Bechmann, Ingo, Gaunitz, Frank, Winter, Karsten
Publicado no Sci Rep (2019)

Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs

Por Hackermüller, Jörg, Reiche, Kristin, Otto, Christian, Hösler, Nadine, Blumert, Conny, Brocke-Heidrich, Katja, Böhlig, Levin, Nitsche, Anne, Kasack, Katharina, Ahnert, Peter, Krupp, Wolfgang, Engeland, Kurt, Stadler, Peter F, Horn, Friedemann
Publicado em 2014

Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci(†)

Por Kirsten, Holger, Al-Hasani, Hoor, Holdt, Lesca, Gross, Arnd, Beutner, Frank, Krohn, Knut, Horn, Katrin, Ahnert, Peter, Burkhardt, Ralph, Reiche, Kristin, Hackermüller, Jörg, Löffler, Markus, Teupser, Daniel, Thiery, Joachim, Scholz, Markus
Publicado no Hum Mol Genet (2015)

Roquin targets mRNAs in a 3′-UTR-specific manner by different modes of regulation

Por Essig, Katharina, Kronbeck, Nina, Guimaraes, Joao C., Lohs, Claudia, Schlundt, Andreas, Hoffmann, Anne, Behrens, Gesine, Brenner, Sven, Kowalska, Joanna, Lopez-Rodriguez, Cristina, Jemielity, Jacek, Holtmann, Helmut, Reiche, Kristin, Hackermüller, Jörg, Sattler, Michael, Zavolan, Mihaela, Heissmeyer, Vigo
Publicado no Nat Commun (2018)

Binding of NUFIP2 to Roquin promotes recognition and regulation of ICOS mRNA

Por Rehage, Nina, Davydova, Elena, Conrad, Christine, Behrens, Gesine, Maiser, Andreas, Stehklein, Jenny E., Brenner, Sven, Klein, Juliane, Jeridi, Aicha, Hoffmann, Anne, Lee, Eunhae, Dianzani, Umberto, Willemsen, Rob, Feederle, Regina, Reiche, Kristin, Hackermüller, Jörg, Leonhardt, Heinrich, Sharma, Sonia, Niessing, Dierk, Heissmeyer, Vigo
Publicado no Nat Commun (2018)

Structured RNAs in the ENCODE selected regions of the human genome

Por Washietl, Stefan, Pedersen, Jakob S., Korbel, Jan O., Stocsits, Claudia, Gruber, Andreas R., Hackermüller, Jörg, Hertel, Jana, Lindemeyer, Manja, Reiche, Kristin, Tanzer, Andrea, Ucla, Catherine, Wyss, Carine, Antonarakis, Stylianos E., Denoeud, France, Lagarde, Julien, Drenkow, Jorg, Kapranov, Philipp, Gingeras, Thomas R., Guigó, Roderic, Snyder, Michael, Gerstein, Mark B., Reymond, Alexandre, Hofacker, Ivo L., Stadler, Peter F.
Publicado em 2007

The Role of lncRNAs TAPIR-1 and -2 as Diagnostic Markers and Potential Therapeutic Targets in Prostate Cancer

Por Friedrich, Maik, Wiedemann, Karolin, Reiche, Kristin, Puppel, Sven-Holger, Pfeifer, Gabriele, Zipfel, Ivonne, Binder, Stefanie, Köhl, Ulrike, Müller, Gerd A., Engeland, Kurt, Aigner, Achim, Füssel, Susanne, Fröhner, Michael, Peitzsch, Claudia, Dubrovska, Anna, Rade, Michael, Christ, Sabina, Schreiber, Stephan, Hackermüller, Jörg, Lehmann, Jörg, Toma, Marieta I., Muders, Michael H., Sommer, Ulrich, Baretton, Gustavo B., Wirth, Manfred, Horn, Friedemann
Publicado no Cancers (Basel) (2020)