Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors

Por Gruber, Andreas R, Martin, Georges, Keller, Walter, Zavolan, Mihaela
Publicado no Wiley Interdiscip Rev RNA (2014)

The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures

Por Gruber, Andreas R., Neuböck, Richard, Hofacker, Ivo L., Washietl, Stefan
Publicado em 2007

Strategies for measuring evolutionary conservation of RNA secondary structures

Por Gruber, Andreas R, Bernhart, Stephan H, Hofacker, Ivo L, Washietl, Stefan
Publicado em 2008

AREsite: a database for the comprehensive investigation of AU-rich elements

Por Gruber, Andreas R., Fallmann, Jörg, Kratochvill, Franz, Kovarik, Pavel, Hofacker, Ivo L.
Publicado em 2011

The Vienna RNA Websuite

Por Gruber, Andreas R., Lorenz, Ronny, Bernhart, Stephan H., Neuböck, Richard, Hofacker, Ivo L.
Publicado em 2008

RNAalifold: improved consensus structure prediction for RNA alignments

Por Bernhart, Stephan H, Hofacker, Ivo L, Will, Sebastian, Gruber, Andreas R, Stadler, Peter F
Publicado em 2008

Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data

Por Kanitz, Alexander, Gypas, Foivos, Gruber, Andreas J., Gruber, Andreas R., Martin, Georges, Zavolan, Mihaela
Publicado no Genome Biol (2015)

Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing

Por Kishore, Shivendra, Gruber, Andreas R, Jedlinski, Dominik J, Syed, Afzal P, Jorjani, Hadi, Zavolan, Mihaela
Publicado em 2013

Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33

Por Schönemann, Lars, Kühn, Uwe, Martin, Georges, Schäfer, Peter, Gruber, Andreas R., Keller, Walter, Zavolan, Mihaela, Wahle, Elmar
Publicado em 2014

A comprehensive analysis of 3′ end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadeny...

Por Gruber, Andreas J., Schmidt, Ralf, Gruber, Andreas R., Martin, Georges, Ghosh, Souvik, Belmadani, Manuel, Keller, Walter, Zavolan, Mihaela
Publicado no Genome Res (2016)

An updated human snoRNAome

Por Jorjani, Hadi, Kehr, Stephanie, Jedlinski, Dominik J., Gumienny, Rafal, Hertel, Jana, Stadler, Peter F., Zavolan, Mihaela, Gruber, Andreas R.
Publicado no Nucleic Acids Res (2016)

Invertebrate 7SK snRNAs

Por Gruber, Andreas R., Koper-Emde, Dorota, Marz, Manja, Tafer, Hakim, Bernhart, Stephan, Obernosterer, Gregor, Mosig, Axel, Hofacker, Ivo L., Stadler, Peter F., Benecke, Bernd-Joachim
Publicado em 2008

Roquin recognizes a non-canonical hexaloop structure in the 3′-UTR of Ox40

Por Janowski, Robert, Heinz, Gitta A., Schlundt, Andreas, Wommelsdorf, Nina, Brenner, Sven, Gruber, Andreas R., Blank, Michael, Buch, Thorsten, Buhmann, Raymund, Zavolan, Mihaela, Niessing, Dierk, Heissmeyer, Vigo, Sattler, Michael
Publicado no Nat Commun (2016)

Tristetraprolin-driven regulatory circuit controls quality and timing of mRNA decay in inflammation

Por Kratochvill, Franz, Machacek, Christian, Vogl, Claus, Ebner, Florian, Sedlyarov, Vitaly, Gruber, Andreas R, Hartweger, Harald, Vielnascher, Raimund, Karaghiosoff, Marina, Rülicke, Thomas, Müller, Mathias, Hofacker, Ivo, Lang, Roland, Kovarik, Pavel
Publicado em 2011

Animal snoRNAs and scaRNAs with exceptional structures

Por Marz, Manja, Gruber, Andreas R, zu Siederdissen, Christian Höner, Amman, Fabian, Badelt, Stefan, Bartschat, Sebastian, Bernhart, Stephan H, Beyer, Wolfgang, Kehr, Stephanie, Lorenz, Ronny, Tanzer, Andrea, Yusuf, Dilmurat, Tafer, Hakim, Hofacker, Ivo L, Stadler, Peter F
Publicado em 2011

Structured RNAs in the ENCODE selected regions of the human genome

Por Washietl, Stefan, Pedersen, Jakob S., Korbel, Jan O., Stocsits, Claudia, Gruber, Andreas R., Hackermüller, Jörg, Hertel, Jana, Lindemeyer, Manja, Reiche, Kristin, Tanzer, Andrea, Ucla, Catherine, Wyss, Carine, Antonarakis, Stylianos E., Denoeud, France, Lagarde, Julien, Drenkow, Jorg, Kapranov, Philipp, Gingeras, Thomas R., Guigó, Roderic, Snyder, Michael, Gerstein, Mark B., Reymond, Alexandre, Hofacker, Ivo L., Stadler, Peter F.
Publicado em 2007