Targeted Assembly of Short Sequence Reads

Por Warren, René L., Holt, Robert A.
Publicado em 2011

Constructing large DNA segments by iterative clone recombination

Por Smailus, Duane E., Warren, Rene L., Holt, Robert A.
Publicado em 2008

NanoSim: nanopore sequence read simulator based on statistical characterization

Por Yang, Chen, Chu, Justin, Warren, René L, Birol, Inanç
Publicado no Gigascience (2017)

Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art

Por Chu, Justin, Mohamadi, Hamid, Warren, René L, Yang, Chen, Birol, Inanç
Publicado no Bioinformatics (2017)

ARCS: scaffolding genome drafts with linked reads

Por Yeo, Sarah, Coombe, Lauren, Warren, René L, Chu, Justin, Birol, Inanç
Publicado no Bioinformatics (2018)

Kollector: transcript-informed, targeted de novo assembly of gene loci

Por Kucuk, Erdi, Chu, Justin, Vandervalk, Benjamin P, Hammond, S Austin, Warren, René L, Birol, Inanc
Publicado no Bioinformatics (2017)

Kollector: transcript-informed, targeted de novo assembly of gene loci

Por Kucuk, Erdi, Chu, Justin, Vandervalk, Benjamin P, Austin Hammond, S, Warren, René L, Birol, Inanc
Publicado no Bioinformatics (2017)

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data

Por Khan, Hamza, Mohamadi, Hamid, Vandervalk, Benjamin P, Warren, Rene L, Chu, Justin, Birol, Inanc
Publicado no Bioinformatics (2018)

Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing

Por Freeman, J. Douglas, Warren, René L., Webb, John R., Nelson, Brad H., Holt, Robert A.
Publicado em 2009

Sealer: a scalable gap-closing application for finishing draft genomes

Por Paulino, Daniel, Warren, René L., Vandervalk, Benjamin P., Raymond, Anthony, Jackman, Shaun D., Birol, Inanç
Publicado no BMC Bioinformatics (2015)

Age- and Disease-Dependent HERV-W Envelope Allelic Variation in Brain: Association with Neuroimmune Gene Expression

Por Bhat, Rakesh K., Ellestad, Kristofor K., Wheatley, B. Matt, Warren, Rene, Holt, Robert A., Power, Christopher
Publicado em 2011

Transcription of foreign DNA in Escherichia coli

Por Warren, René L., Freeman, John D., Levesque, Roger C., Smailus, Duane E., Flibotte, Stephane, Holt, Robert A.
Publicado em 2008

Derivation of HLA types from shotgun sequence datasets

Por Warren, René L, Choe, Gina, Freeman, Douglas J, Castellarin, Mauro, Munro, Sarah, Moore, Richard, Holt, Robert A
Publicado em 2012

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers

Por Coombe, Lauren, Zhang, Jessica, Vandervalk, Benjamin P., Chu, Justin, Jackman, Shaun D., Birol, Inanc, Warren, René L.
Publicado no BMC Bioinformatics (2018)

LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads

Por Warren, René L., Yang, Chen, Vandervalk, Benjamin P., Behsaz, Bahar, Lagman, Albert, Jones, Steven J. M., Birol, Inanç
Publicado no Gigascience (2015)

Nonlinear electrophoretic response yields a unique parameter for separation of biomolecules

Por Pel, Joel, Broemeling, David, Mai, Laura, Poon, Hau-Ling, Tropini, Giorgia, Warren, René L., Holt, Robert A., Marziali, Andre
Publicado em 2009

Spaced Seed Data Structures for De Novo Assembly

Por Birol, Inanç, Chu, Justin, Mohamadi, Hamid, Jackman, Shaun D., Raghavan, Karthika, Vandervalk, Benjamin P., Raymond, Anthony, Warren, René L.
Publicado no Int J Genomics (2015)

Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clon...

Por Warren, René L., Freeman, J. Douglas, Zeng, Thomas, Choe, Gina, Munro, Sarah, Moore, Richard, Webb, John R., Holt, Robert A.
Publicado em 2011

Co-occurrence of anaerobic bacteria in colorectal carcinomas

Por Warren, René L, Freeman, Douglas J, Pleasance, Stephen, Watson, Peter, Moore, Richard A, Cochrane, Kyla, Allen-Vercoe, Emma, Holt, Robert A
Publicado em 2013

Neo-antigens predicted by tumor genome meta-analysis correlate with increased patient survival

Por Brown, Scott D., Warren, Rene L., Gibb, Ewan A., Martin, Spencer D., Spinelli, John J., Nelson, Brad H., Holt, Robert A.
Publicado em 2014