HLA predictions from the bronchoalveolar lavage fluid samples of five patients at the early stage of the wuhan seafood market COVID-19 outbreak

Tekijä Warren, René L., Birol, Inanç
Julkaisussa ArXiv (2020)

HLA predictions from the bronchoalveolar lavage fluid and blood samples of eight COVID-19 patients at the pandemic onset

Tekijä Warren, René L, Birol, Inanç
Julkaisussa Bioinformatics (2020)

Retrospective in silico HLA predictions from COVID-19 patients reveal alleles associated with disease prognosis

Tekijä Warren, René L., Birol, Inanç
Julkaisussa medRxiv (2020)

Interactive SARS-COV-2 mutation timemaps

Tekijä Warren, René L., Birol, Inanç
Julkaisussa ArXiv (2020)

Interactive SARS-CoV-2 mutation timemaps

Tekijä Warren, René L., Birol, Inanc
Julkaisussa F1000Res (2021)

Targeted Assembly of Short Sequence Reads

Tekijä Warren, René L., Holt, Robert A.
Julkaistu 2011

Constructing large DNA segments by iterative clone recombination

Tekijä Smailus, Duane E., Warren, Rene L., Holt, Robert A.
Julkaistu 2008

NanoSim: nanopore sequence read simulator based on statistical characterization

Tekijä Yang, Chen, Chu, Justin, Warren, René L, Birol, Inanç
Julkaisussa Gigascience (2017)

Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art

Tekijä Chu, Justin, Mohamadi, Hamid, Warren, René L, Yang, Chen, Birol, Inanç
Julkaisussa Bioinformatics (2017)

ARCS: scaffolding genome drafts with linked reads

Tekijä Yeo, Sarah, Coombe, Lauren, Warren, René L, Chu, Justin, Birol, Inanç
Julkaisussa Bioinformatics (2018)

ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs

Tekijä Coombe, Lauren, Nikolić, Vladimir, Chu, Justin, Birol, Inanc, Warren, René L
Julkaisussa Bioinformatics (2020)

Assembling millions of short DNA sequences using SSAKE

Tekijä Warren, René L., Sutton, Granger G., Jones, Steven J. M., Holt, Robert A.
Julkaisussa Bioinformatics (2007)

Kollector: transcript-informed, targeted de novo assembly of gene loci

Tekijä Kucuk, Erdi, Chu, Justin, Vandervalk, Benjamin P, Hammond, S Austin, Warren, René L, Birol, Inanc
Julkaisussa Bioinformatics (2017)

Kollector: transcript-informed, targeted de novo assembly of gene loci

Tekijä Kucuk, Erdi, Chu, Justin, Vandervalk, Benjamin P, Austin Hammond, S, Warren, René L, Birol, Inanc
Julkaisussa Bioinformatics (2017)

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data

Tekijä Khan, Hamza, Mohamadi, Hamid, Vandervalk, Benjamin P, Warren, Rene L, Chu, Justin, Birol, Inanc
Julkaisussa Bioinformatics (2018)

Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data

Tekijä Hafezqorani, Saber, Yang, Chen, Lo, Theodora, Nip, Ka Ming, Warren, René L, Birol, Inanc
Julkaisussa Gigascience (2020)

Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing

Tekijä Freeman, J. Douglas, Warren, René L., Webb, John R., Nelson, Brad H., Holt, Robert A.
Julkaistu 2009

Sealer: a scalable gap-closing application for finishing draft genomes

Tekijä Paulino, Daniel, Warren, René L., Vandervalk, Benjamin P., Raymond, Anthony, Jackman, Shaun D., Birol, Inanç
Julkaisussa BMC Bioinformatics (2015)

RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes

Tekijä Nip, Ka Ming, Chiu, Readman, Yang, Chen, Chu, Justin, Mohamadi, Hamid, Warren, René L., Birol, Inanc
Julkaisussa Genome Res (2020)

Transcription of foreign DNA in Escherichia coli

Tekijä Warren, René L., Freeman, John D., Levesque, Roger C., Smailus, Duane E., Flibotte, Stephane, Holt, Robert A.
Julkaistu 2008