ntHash: recursive nucleotide hashing

Autor Mohamadi, Hamid, Chu, Justin, Vandervalk, Benjamin P., Birol, Inanc
Vydáno v Bioinformatics (2016)

Kollector: transcript-informed, targeted de novo assembly of gene loci

Autor Kucuk, Erdi, Chu, Justin, Vandervalk, Benjamin P, Hammond, S Austin, Warren, René L, Birol, Inanc
Vydáno v Bioinformatics (2017)

Kollector: transcript-informed, targeted de novo assembly of gene loci

Autor Kucuk, Erdi, Chu, Justin, Vandervalk, Benjamin P, Austin Hammond, S, Warren, René L, Birol, Inanc
Vydáno v Bioinformatics (2017)

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data

Autor Khan, Hamza, Mohamadi, Hamid, Vandervalk, Benjamin P, Warren, Rene L, Chu, Justin, Birol, Inanc
Vydáno v Bioinformatics (2018)

Sealer: a scalable gap-closing application for finishing draft genomes

Autor Paulino, Daniel, Warren, René L., Vandervalk, Benjamin P., Raymond, Anthony, Jackman, Shaun D., Birol, Inanç
Vydáno v BMC Bioinformatics (2015)

DIDA: Distributed Indexing Dispatched Alignment

Autor Mohamadi, Hamid, Vandervalk, Benjamin P, Raymond, Anthony, Jackman, Shaun D, Chu, Justin, Breshears, Clay P, Birol, Inanc
Vydáno v PLoS One (2015)

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers

Autor Coombe, Lauren, Zhang, Jessica, Vandervalk, Benjamin P., Chu, Justin, Jackman, Shaun D., Birol, Inanc, Warren, René L.
Vydáno v BMC Bioinformatics (2018)

LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads

Autor Warren, René L., Yang, Chen, Vandervalk, Benjamin P., Behsaz, Bahar, Lagman, Albert, Jones, Steven J. M., Birol, Inanç
Vydáno v Gigascience (2015)

Spaced Seed Data Structures for De Novo Assembly

Autor Birol, Inanç, Chu, Justin, Mohamadi, Hamid, Jackman, Shaun D., Raghavan, Karthika, Vandervalk, Benjamin P., Raymond, Anthony, Warren, René L.
Vydáno v Int J Genomics (2015)

Konnector v2.0: pseudo-long reads from paired-end sequencing data

Autor Vandervalk, Benjamin P, Yang, Chen, Xue, Zhuyi, Raghavan, Karthika, Chu, Justin, Mohamadi, Hamid, Jackman, Shaun D, Chiu, Readman, Warren, René L, Birol, Inanç
Vydáno v BMC Med Genomics (2015)

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter

Autor Jackman, Shaun D., Vandervalk, Benjamin P., Mohamadi, Hamid, Chu, Justin, Yeo, Sarah, Hammond, S. Austin, Jahesh, Golnaz, Khan, Hamza, Coombe, Lauren, Warren, Rene L., Birol, Inanc
Vydáno v Genome Res (2017)

Tigmint: correcting assembly errors using linked reads from large molecules

Autor Jackman, Shaun D., Coombe, Lauren, Chu, Justin, Warren, Rene L., Vandervalk, Benjamin P., Yeo, Sarah, Xue, Zhuyi, Mohamadi, Hamid, Bohlmann, Joerg, Jones, Steven J.M., Birol, Inanc
Vydáno v BMC Bioinformatics (2018)

Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics’ GemCode Sequencing Data

Autor Coombe, Lauren, Warren, René L., Jackman, Shaun D., Yang, Chen, Vandervalk, Benjamin P., Moore, Richard A., Pleasance, Stephen, Coope, Robin J., Bohlmann, Joerg, Holt, Robert A., Jones, Steven J. M., Birol, Inanc
Vydáno v PLoS One (2016)

Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation

Autor Jackman, Shaun D., Warren, René L., Gibb, Ewan A., Vandervalk, Benjamin P., Mohamadi, Hamid, Chu, Justin, Raymond, Anthony, Pleasance, Stephen, Coope, Robin, Wildung, Mark R., Ritland, Carol E., Bousquet, Jean, Jones, Steven J. M., Bohlmann, Joerg, Birol, Inanç
Vydáno v Genome Biol Evol (2015)

The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA

Autor Hammond, S. Austin, Warren, René L., Vandervalk, Benjamin P., Kucuk, Erdi, Khan, Hamza, Gibb, Ewan A., Pandoh, Pawan, Kirk, Heather, Zhao, Yongjun, Jones, Martin, Mungall, Andrew J., Coope, Robin, Pleasance, Stephen, Moore, Richard A., Holt, Robert A., Round, Jessica M., Ohora, Sara, Walle, Branden V., Veldhoen, Nik, Helbing, Caren C., Birol, Inanc
Vydáno v Nat Commun (2017)

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data

Autor Birol, Inanc, Raymond, Anthony, Jackman, Shaun D., Pleasance, Stephen, Coope, Robin, Taylor, Greg A., Yuen, Macaire Man Saint, Keeling, Christopher I., Brand, Dana, Vandervalk, Benjamin P., Kirk, Heather, Pandoh, Pawan, Moore, Richard A., Zhao, Yongjun, Mungall, Andrew J., Jaquish, Barry, Yanchuk, Alvin, Ritland, Carol, Boyle, Brian, Bousquet, Jean, Ritland, Kermit, MacKay, John, Bohlmann, Jörg, Jones, Steven J.M.
Vydáno 2013