MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing

Por Urich, Mark A, Nery, Joseph R, Lister, Ryan, Schmitz, Robert J, Ecker, Joseph R
Publicado no Nat Protoc (2015)

Processing and Subcellular Trafficking of ER-Tethered EIN2 Control Response to Ethylene Gas

Por Qiao, Hong, Shen, Zhouxin, Huang, Shaoshan Carol, Schmitz, Robert J., Urich, Mark A., Briggs, Steven P., Ecker, Joseph R.
Publicado em 2012

Response to Perspective: “Separation anxiety: An analysis of ethylene-induced cleavage of EIN2”

Por Qiao, Hong, Shen, Zhouxin, Huang, Shao-shan Carol, Schmitz, Robert J., Urich, Mark A., Briggs, Steven P., Ecker, Joseph R.
Publicado em 2013

Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants

Por Schmitz, Robert J., Schultz, Matthew D., Lewsey, Mathew G., O’Malley, Ronan C., Urich, Mark A., Libiger, Ondrej, Schork, Nicholas J., Ecker, Joseph R.
Publicado em 2011

Mobile small RNAs regulate genome-wide DNA methylation

Por Lewsey, Mathew G., Hardcastle, Thomas J., Melnyk, Charles W., Molnar, Attila, Valli, Adrián, Urich, Mark A., Nery, Joseph R., Baulcombe, David C., Ecker, Joseph R.
Publicado no Proc Natl Acad Sci U S A (2016)

Unique cell-type specific patterns of DNA methylation in the root meristem

Por Kawakatsu, Taiji, Stuart, Tim, Valdes, Manuel, Breakfield, Natalie, Schmitz, Robert J., Nery, Joseph R., Urich, Mark A., Han, Xinwei, Lister, Ryan, Benfey, Philip N., Ecker, Joseph R.
Publicado no Nat Plants (2016)

Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population

Por Schmitz, Robert J., He, Yupeng, Valdés-López, Oswaldo, Khan, Saad M., Joshi, Trupti, Urich, Mark A., Nery, Joseph R., Diers, Brian, Xu, Dong, Stacey, Gary, Ecker, Joseph R.
Publicado em 2013

Patterns of Population Epigenomic Diversity

Por Schmitz, Robert J., Schultz, Matthew D., Urich, Mark A., Nery, Joseph R., Pelizzola, Mattia, Libiger, Ondrej, Alix, Andrew, McCosh, Richard B., Chen, Huaming, Schork, Nicholas J., Ecker, Joseph R.
Publicado em 2013

Comparison of the transcriptional landscapes between human and mouse tissues

Por Lin, Shin, Lin, Yiing, Nery, Joseph R., Urich, Mark A., Breschi, Alessandra, Davis, Carrie A., Dobin, Alexander, Zaleski, Christopher, Beer, Michael A., Chapman, William C., Gingeras, Thomas R., Ecker, Joseph R., Snyder, Michael P.
Publicado no Proc Natl Acad Sci U S A (2014)

Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain

Por Mo, Alisa, Mukamel, Eran A., Davis, Fred P., Luo, Chongyuan, Henry, Gilbert L., Picard, Serge, Urich, Mark A., Nery, Joseph R., Sejnowski, Terrence J., Lister, Ryan, Eddy, Sean R., Ecker, Joseph R., Nathans, Jeremy
Publicado no Neuron (2015)

Epigenomic landscapes of retinal rods and cones

Por Mo, Alisa, Luo, Chongyuan, Davis, Fred P, Mukamel, Eran A, Henry, Gilbert L, Nery, Joseph R, Urich, Mark A, Picard, Serge, Lister, Ryan, Eddy, Sean R, Beer, Michael A, Ecker, Joseph R, Nathans, Jeremy
Publicado no eLife (2016)

Human Body Epigenome Maps Reveal Noncanonical DNA Methylation Variation

Por Schultz, Matthew D., He, Yupeng, Whitaker, John W., Hariharan, Manoj, Mukamel, Eran A., Leung, Danny, Rajagopal, Nisha, Nery, Joseph R., Urich, Mark A., Chen, Huaming, Lin, Shin, Lin, Yiing, Jung, Inkyung, Schmitt, Anthony D., Selvaraj, Siddarth, Ren, Bing, Sejnowski, Terrence J., Wang, Wei, Ecker, Joseph R.
Publicado no Nature (2015)

Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis

Por Chang, Katherine Noelani, Zhong, Shan, Weirauch, Matthew T, Hon, Gary, Pelizzola, Mattia, Li, Hai, Huang, Shao-shan Carol, Schmitz, Robert J, Urich, Mark A, Kuo, Dwight, Nery, Joseph R, Qiao, Hong, Yang, Ally, Jamali, Abdullah, Chen, Huaming, Ideker, Trey, Ren, Bing, Bar-Joseph, Ziv, Hughes, Timothy R, Ecker, Joseph R
Publicado em 2013

Global Epigenomic Reconfiguration During Mammalian Brain Development

Por Lister, Ryan, Mukamel, Eran A., Nery, Joseph R., Urich, Mark, Puddifoot, Clare A., Johnson, Nicholas D., Lucero, Jacinta, Huang, Yun, Dwork, Andrew J., Schultz, Matthew D., Yu, Miao, Tonti-Filippini, Julian, Heyn, Holger, Hu, Shijun, Wu, Joseph C., Rao, Anjana, Esteller, Manel, He, Chuan, Haghighi, Fatemeh G., Sejnowski, Terrence J., Behrens, M. Margarita, Ecker, Joseph R.
Publicado em 2013

Epigenomic diversity in a global collection of Arabidopsis thaliana accessions

Por Kawakatsu, Taiji, Huang, Shao-shan Carol, Jupe, Florian, Sasaki, Eriko, Schmitz, Robert J., Urich, Mark A., Castanon, Rosa, Nery, Joseph R., Barragan, Cesar, He, Yupeng, Chen, Huaming, Dubin, Manu, Lee, Cheng-Ruei, Wang, Congmao, Bemm, Felix, Becker, Claude, O’Neil, Ryan, O’Malley, Ronan C., Quarless, Danjuma X., Schork, Nicholas J., Weigel, Detlef, Nordborg, Magnus, Ecker, Joseph R.
Publicado no Cell (2016)

Epigenomic Analysis of Multi-lineage Differentiation of Human Embryonic Stem Cells

Por Garcia, Benjamin, Xie, Wei, Schultz, Matt, Lister, Ryan, Hou, Zhonggang, Rajagopal, Nisha, Ray, Pradipta, Whitaker, John W., Tian, Shulan, Hawkins, R. David, Leung, Danny, Yang, Hongbo, Wang, Tao, Lee, Ah Young, Swanson, Scott A., Zhang, Jiuchun, Zhu, Yun, Kim, Audrey, Nery, Joseph, Urich, Mark A., Kuan, Samantha, Yen, Chia-an, Klugman, Sarit, Yu, Pengzhi, Suknuntha, Kran, Propson, Nicholas E., Chen, Huaming, Edsall, Lee E., Wagner, Ulrich, Li, Yan, Ye, Zhen, Kulkarni, Ashwinikumar, Xuan, Zhenyu, Chung, Wen-yu, Chi, Neil C., Antosiewicz-Bourget, Jessica, Slukvin, Igor, Stewart, Ron, Zhang, Michael Q., Wang, Wei, Thomson, James A., Ecker, Joseph R., Ren, Bing
Publicado em 2013

Epigenomic Analysis of Multi-lineage Differentiation of Human Embryonic Stem Cells

Por Xie, Wei, Schultz, Matthew D., Lister, Ryan, Hou, Zhonggang, Rajagopal, Nisha, Ray, Pradipta, Whitaker, John W., Tian, Shulan, Hawkins, R. David, Leung, Danny, Yang, Hongbo, Wang, Tao, Lee, Ah Young, Swanson, Scott A., Zhang, Jiuchun, Zhu, Yun, Kim, Audrey, Nery, Joseph R., Urich, Mark A., Kuan, Samantha, Yen, Chia-an, Klugman, Sarit, Yu, Pengzhi, Suknuntha, Kran, Propson, Nicholas E., Chen, Huaming, Edsall, Lee E., Wagner, Ulrich, Li, Yan, Ye, Zhen, Kulkarni, Ashwinikumar, Xuan, Zhenyu, Chung, Wen-Yu, Chi, Neil C., Antosiewicz-Bourget, Jessica E., Slukvin, Igor, Stewart, Ron, Zhang, Michael Q., Wang, Wei, Thomson, James A., Ecker, Joseph R., Ren, Bing
Publicado em 2013