Identification of disulfide bonds in protein proteolytic degradation products using the de novo-protein unique sequence tags approach

le Shen, Yufeng, Tolić, Nikola, Purvine, Samuel O., Smith, Richard D.
Foilsithe 2010

Improving CID, HCD, and ETD FT MS/MS degradome-peptidome identifications using high accuracy mass information

le Shen, Yufeng, Tolić, Nikola, Purvine, Samuel O., Smith, Richard D.
Foilsithe 2011

Informatics Strategies for Large-Scale Novel Cross-Linking Analysis

le Anderson, Gordon A., Tolic, Nikola, Tang, Xiaoting, Zheng, Chunxiang, Bruce, James E.
Foilsithe 2007

A mass graph-based approach for the identification of modified proteoforms using top-down tandem mass spectra

le Kou, Qiang, Wu, Si, Tolić, Nikola, Paša-Tolić, Ljiljana, Liu, Yunlong, Liu, Xiaowen
Foilsithe in Bioinformatics (2017)

Identification of ultramodified proteins using top-down tandem mass spectra

le Liu, Xiaowen, Hengel, Shawna, Wu, Si, Tolić, Nikola, Pasa-Tolić, Ljiljana, Pevzner, Pavel A.
Foilsithe 2013

“Zero-length” cross-linking in solid state as an approach for analysis of protein–protein interactions

le El-Shafey, Ahmed, Tolic, Nikola, Young, Malin M., Sale, Kenneth, Smith, Richard D., Kery, Vladimir
Foilsithe 2006

Identification of Protein-Protein Interactions and Topologies in Living Cells with Chemical Cross-linking and Mass Spectrometry

le Zhang, Haizhen, Tang, Xiaoting, Munske, Gerhard R., Tolic, Nikola, Anderson, Gordon A., Bruce, James E.
Foilsithe 2009

Characterization of proteoforms with unknown post-translational modifications using the MIScore

le Kou, Qiang, Zhu, Binhai, Wu, Si, Ansong, Charles, Tolić, Nikola, Paša-Tolić, Ljiljana, Liu, Xiaowen
Foilsithe in J Proteome Res (2016)

De Novo Sequencing of Unique Sequence Tags for Discovery of Post-Translational Modifications of Proteins

le Shen, Yufeng, Tolić, Nikola, Hixson, Kim K., Purvine, Samuel O., Anderson, Gordon A., Smith, Richard D.
Foilsithe 2008

Mass spectrometry analysis of proteome-wide proteolytic post-translational degradation of proteins

le Shen, Yufeng, Hixson, Kim K., Tolić, Nikola, Camp, David G., Purvine, Samuel O., Moore, Ronald J., Smith, Richard D.
Foilsithe 2008

An integrated workflow for characterizing intact phosphoproteins from complex mixtures

le Wu, Si, Yang, Feng, Zhao, Rui, Tolić, Nikola, Robinson, Errol W., Camp, David, Smith, Richard D., Paša-Tolić, Ljiljana
Foilsithe 2009

Potential utilization of terrestrially derived dissolved organic matter by aquatic microbial communities in saline lakes

le Yang, Jian, Jiang, Hongchen, Liu, Wen, Huang, Liuqin, Huang, Jianrong, Wang, Beichen, Dong, Hailiang, Chu, Rosalie K., Tolic, Nikola
Foilsithe in ISME J (2020)

An integrated top-down and bottom-up strategy for broadly characterizing protein isoforms and modifications

le Wu, Si, Lourette, Natacha M., Tolić, Nikola, Zhao, Rui, Robinson, Errol W., Tolmachev, Aleksey V., Smith, Richard D., Paša-Tolić, Ljiljana
Foilsithe 2009

Identification of Crosslinked Peptides after Click-based Enrichment Using Sequential CID and ETD Tandem Mass Spectrometry

le Chowdhury, Saiful M., Du, Xiuxia, Tolić, Nikola, Wu, Si, Moore, Ronald J., Mayer, M. Uljana, Smith, Richard D., Adkins, Joshua N.
Foilsithe 2009

Two-dimensional liquid chromatography system for online top-down mass spectrometry

le Tian, Zhixin, Zhao, Rui, Tolić, Nikola, Moore, Ronald J., Stenoien, David L., Robinson, Errol W., Smith, Richard D., Paša-Tolić, Ljiljana
Foilsithe 2010

A strategy for degradomic-peptidomic analysis of human blood plasma

le Shen, Yufeng, Liu, Tao, Tolić, Nikola, Petritis, Brianne O., Zhao, Rui, Moore, Ronald J., Purvine, Samuel O., Camp, David G., Smith, Richard D.
Foilsithe 2010

Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods

le Shen, Yufeng, Tolić, Nikola, Xie, Fang, Zhao, Rui, Purvine, Samuel O., Schepmoes, Athena A., Ronald, J. Moore, Anderson, Gordon A., Smith, Richard D.
Foilsithe 2011

Proteome-wide identification of proteins and their modifications with decreased ambiguities and improved false discovery rates using unique sequence tags

le Shen, Yufeng, Tolić, Nikola, Hixson, Kim K., Purvine, Samuel O., Paša-Tolić, Ljiljana, Qian, Wei-Jun, Adkins, Joshua N., Moore, Ronald J., Smith, Richard D.
Foilsithe 2008

Characterization of intact N- and O-linked glycopeptides using higher energy collisional dissociation

le Cao, Li, Tolić, Nikola, Qu, Yi, Meng, Da, Zhao, Rui, Zhang, Qibin, Moore, Ronald J., Zink, Erika M., Lipton, Mary S., Paša-Tolić, Ljiljana, Wu, Si
Foilsithe in Anal Biochem (2014)

Top-down analysis of protein samples by de novo sequencing techniques

le Vyatkina, Kira, Wu, Si, Dekker, Lennard J. M., VanDuijn, Martijn M., Liu, Xiaowen, Tolić, Nikola, Luider, Theo M., Paša-Tolić, Ljiljana, Pevzner, Pavel A.
Foilsithe in Bioinformatics (2016)