Spectral Deconvolution for Gas Chromatography Mass Spectrometry-Based Metabolomics: Current Status and Future Perspectives

Por Du, Xiuxia, Zeisel, Steven H
Publicado em 2013

ADAP-GC 3.0: Improved Peak Detection and Deconvolution of Co-eluting Metabolites from GC/TOF-MS Data for Metabolomics Studies

Por Ni, Yan, Su, Mingming, Qiu, Yunping, Jia, Wei, Du, Xiuxia
Publicado no Anal Chem (2016)

Metabolic reprogramming by folate restriction leads to a less aggressive cancer phenotype

Por Ashkavand, Zahra, O’Flanagan, Ciara, Hennig, Mirko, Du, Xiuxia, Hursting, Stephen D., Krupenko, Sergey A.
Publicado no Mol Cancer Res (2017)

Protein Structural Analysis via Mass Spectrometry-Based Proteomics

Por Artigues, Antonio, Nadeau, Owen W., Rimmer, Mary Ashley, Villar, Maria T., Du, Xiuxia, Fenton, Aron W., Carlson, Gerald M.
Publicado no Adv Exp Med Biol (2016)

Identification of Crosslinked Peptides after Click-based Enrichment Using Sequential CID and ETD Tandem Mass Spectrometry

Por Chowdhury, Saiful M., Du, Xiuxia, Tolić, Nikola, Wu, Si, Moore, Ronald J., Mayer, M. Uljana, Smith, Richard D., Adkins, Joshua N.
Publicado em 2009

Xlink-Identifier: An Automated Data Analysis Platform for Confident Identifications of Chemically Cross-linked Peptides using Tandem Mass Spectrometry

Por Du, Xiuxia, Chowdhury, Saiful M., Manes, Nathan P., Wu, Si, Mayer, M. Uljana, Adkins, Joshua N., Anderson, Gordon A., Smith, Richard D.
Publicado em 2011

Linear Discriminant Analysis-Based Estimation of the False Discovery Rate for Phosphopeptide Identifications

Por Du, Xiuxia, Yang, Feng, Manes, Nathan P., Stenoien, David L., Monroe, Matthew E., Adkins, Joshua N., States, David J., Purvine, Samuel O., Camp, David G., Smith, Richard D.
Publicado em 2008

Discovery of Mouse Spleen Signaling Responses to Anthrax using Label-Free Quantitative Phosphoproteomics via Mass Spectrometry

Por Manes, Nathan P., Dong, Li, Zhou, Weidong, Du, Xiuxia, Reghu, Nikitha, Kool, Arjan C., Choi, Dahan, Bailey, Charles L., Petricoin, Emanuel F., Liotta, Lance A., Popov, Serguei G.
Publicado em 2011

Comparative Proteomics of Human Monkeypox and Vaccinia Intracellular Mature and Extracellular Enveloped Virions

Por Manes, Nathan P., Estep, Ryan D., Mottaz, Heather M., Moore, Ronald J., Clauss, Therese R. W., Monroe, Matthew E., Du, Xiuxia, Adkins, Joshua N., Wong, Scott W., Smith, Richard D.
Publicado em 2008

Training in metabolomics research. II. Processing and statistical analysis of metabolomics data, metabolite identification, pathway analysis, applications of metabolomics and its f...

Por Barnes, Stephen, Benton, H. Paul, Casazza, Krista, Cooper, Sara, Cui, Xiangqin, Du, Xiuxia, Engler, Jeffrey, Kabarowski, Janusz H., Li, Shuzhao, Pathmasiri, Wimal, Prasain, Jeevan K., Renfrow, Matthew B., Tiwari, Hemant K.
Publicado no J Mass Spectrom (2016)

A Computational Strategy to Analyze Label-Free Temporal Bottom-Up Proteomics Data

Por Du, Xiuxia, Callister, Stephen J., Manes, Nathan P., Adkins, Joshua N., Alexandridis, Roxana A., Zeng, Xiaohua, Roh, Jung Hyeob, Smith, William E., Donohue, Timothy J., Kaplan, Samuel, Smith, Richard D., Lipton, Mary S.
Publicado em 2008

Training in metabolomics research. I. Designing the experiment, collecting and extracting samples and generating metabolomics data

Por Barnes, Stephen, Benton, H. Paul, Casazza, Krista, Cooper, Sara J., Cui, Xiangqin, Du, Xiuxia, Engler, Jeffrey, Kabarowski, Janusz H., Li, Shuzhao, Pathmasiri, Wimal, Prasain, Jeevan K., Renfrow, Matthew B., Tiwari, Hemant K.
Publicado no J Mass Spectrom (2016)

Phosphoproteomics Profiling of Human Skin Fibroblast Cells Reveals Pathways and Proteins Affected by Low Doses of Ionizing Radiation

Por Yang, Feng, Waters, Katrina M., Miller, John H., Gritsenko, Marina A., Zhao, Rui, Du, Xiuxia, Livesay, Eric A., Purvine, Samuel O., Monroe, Matthew E., Wang, Yingchun, Camp, David G., Smith, Richard D., Stenoien, David L.
Publicado em 2010

Quantitative Phosphoproteome Analysis of Lysophosphatidic Acid Induced Chemotaxis applying Dual-step (18)O Labeling Coupled with Immobilized Metal-ion Affinity Chromatography

Por Ding, Shi-Jian, Wang, Yingchun, Jacobs, Jon M., Qian, Wei-Jun, Yang, Feng, Tolmachev, Aleksey V., Du, Xiuxia, Wang, Wei, Moore, Ronald J., Monroe, Matthew E., Purvine, Samuel O., Waters, Katrina, Heibeck, Tyler H., Adkins, Joshua N., Camp, David G., Klemke, Richard L., Smith, Richard D.
Publicado em 2008

The PHD and Chromo Domains Regulate the ATPase Activity of the Human Chromatin Remodeler CHD4

Por Watson, Aleksandra A., Mahajan, Pravin, Mertens, Haydyn D.T., Deery, Michael J., Zhang, Wenchao, Pham, Peter, Du, Xiuxia, Bartke, Till, Zhang, Wei, Edlich, Christian, Berridge, Georgina, Chen, Yun, Burgess-Brown, Nicola A., Kouzarides, Tony, Wiechens, Nicola, Owen-Hughes, Tom, Svergun, Dmitri I., Gileadi, Opher, Laue, Ernest D.
Publicado em 2012

Applying a Targeted Label-free Approach using LC-MS AMT Tags to Evaluate Changes in Protein Phosphorylation Following Phosphatase Inhibition

Por Yang, Feng, Jaitly, Navdeep, Jayachandran, Hemalatha, Luo, Quanzhou, Monroe, Matthew E., Du, Xiuxia, Gritsenko, Marina A., Zhang, Rui, Anderson, David J., Purvine, Samuel O., Adkins, Joshua N., Moore, Ronald J., Ding, Shi-Jian, Mottaz, Heather M., Lipton, Mary S., Camp, David G., Udseth, Harold R., Smith, Richard D., Rossie, Sandra
Publicado em 2007