Circuitry and dynamics of human transcription factor regulatory networks

Por Neph, Shane, Stergachis, Andrew B., Reynolds, Alex, Sandstrom, Richard, Borenstein, Elhanan, Stamatoyannopoulos, John A.
Publicado em 2012

Rapid empirical discovery of optimal peptides for targeted proteomics

Por Stergachis, Andrew B., MacLean, Brendan, Lee, Kristen, Stamatoyannopoulos, John A., MacCoss, Michael J.
Publicado em 2011

SRC Homology 2 Domain Binding Sites in Insulin, IGF-1 and FGF receptor mediated signaling networks reveal an extensive potential interactome

Por Liu, Bernard A, Engelmann, Brett W, Jablonowski, Karl, Higginbotham, Katherine, Stergachis, Andrew B, Nash, Piers D
Publicado em 2012

Using Data Independent Acquisition (DIA) to Model High-responding Peptides for Targeted Proteomics Experiments

Por Searle, Brian C., Egertson, Jarrett D., Bollinger, James G., Stergachis, Andrew B., MacCoss, Michael J.
Publicado no Mol Cell Proteomics (2015)

Personal and population genomics of human regulatory variation

Por Vernot, Benjamin, Stergachis, Andrew B., Maurano, Matthew T., Vierstra, Jeff, Neph, Shane, Thurman, Robert E., Stamatoyannopoulos, John A., Akey, Joshua M.
Publicado em 2012

Exonic transcription factor binding directs codon choice and impacts protein evolution

Por Stergachis, Andrew B., Haugen, Eric, Shafer, Anthony, Fu, Wenqing, Vernot, Benjamin, Reynolds, Alex, Raubitschek, Anthony, Ziegler, Steven, LeProust, Emily M., Akey, Joshua M., Stamatoyannopoulos, John A.
Publicado em 2013

DNase I–hypersensitive exons colocalize with promoters and distal regulatory elements

Por Mercer, Tim R, Edwards, Stacey L, Clark, Michael B, Neph, Shane J, Wang, Hao, Stergachis, Andrew B, John, Sam, Sandstrom, Richard, Li, Guoliang, Sandhu, Kuljeet S, Ruan, Yijun, Nielsen, Lars K, Mattick, John S, Stamatoyannopoulos, John A
Publicado no Nat Genet (2013)

Developmental Fate and Cellular Maturity Encoded in Human Regulatory DNA Landscapes

Por Stergachis, Andrew B., Neph, Shane, Reynolds, Alex, Humbert, Richard, Miller, Brady, Paige, Sharon L., Vernot, Benjamin, Cheng, Jeffrey B., Thurman, Robert E., Sandstrom, Richard, Haugen, Eric, Heimfeld, Shelly, Murry, Charles E., Akey, Joshua M., Stamatoyannopoulos, John A.
Publicado em 2013

Panorama: A Targeted Proteomics Knowledge Base

Por Sharma, Vagisha, Eckels, Josh, Taylor, Greg K., Shulman, Nicholas J., Stergachis, Andrew B., Joyner, Shannon A., Yan, Ping, Whiteaker, Jeffrey R., Halusa, Goran N., Schilling, Birgit, Gibson, Bradford W., Colangelo, Christopher M., Paulovich, Amanda G., Carr, Steven A., Jaffe, Jacob D., MacCoss, Michael J., MacLean, Brendan
Publicado em 2014

Conservation of trans-acting circuitry during mammalian regulatory evolution

Por Stergachis, Andrew B., Neph, Shane, Sandstrom, Richard, Haugen, Eric, Reynolds, Alex P., Zhang, Miaohua, Byron, Rachel, Canfield, Theresa, Stelhing-Sun, Sandra, Lee, Kristen, Thurman, Robert E., Vong, Shinny, Bates, Daniel, Neri, Fidencio, Diegel, Morgan, Giste, Erika, Dunn, Douglas, Vierstra, Jeff, Hansen, R. Scott, Johnson, Audra K., Sabo, Peter J., Wilken, Matthew S., Reh, Thomas A., Treuting, Piper M., Kaul, Rajinder, Groudine, Mark, Bender, M. A., Borenstein, Elhanan, Stamatoyannopoulos, John A.
Publicado no Nature (2014)

An expansive human regulatory lexicon encoded in transcription factor footprints

Por Neph, Shane, Vierstra, Jeff, Stergachis, Andrew B., Reynolds, Alex P., Haugen, Eric, Vernot, Benjamin, Thurman, Robert E., Sandstrom, Richard, Johnson, Audra K., Maurano, Matthew T., Humbert, Richard, Rynes, Eric, Wang, Hao, Vong, Shinny, Lee, Kristen, Bates, Daniel, Diegel, Morgan, Roach, Vaughn, Dunn, Douglas, Neri, Jun, Schafer, Anthony, Hansen, R. Scott, Kutyavin, Tanya, Giste, Erika, Weaver, Molly, Canfield, Theresa, Sabo, Peter, Zhang, Miaohua, Balasundaram, Gayathri, Byron, Rachel, MacCoss, Michael J., Akey, Joshua M., Bender, Michael, Groudine, Mark, Kaul, Rajinder, Stamatoyannopoulos, John A.
Publicado em 2012

The accessible chromatin landscape of the human genome

Por Thurman, Robert E., Rynes, Eric, Humbert, Richard, Vierstra, Jeff, Maurano, Matthew T., Haugen, Eric, Sheffield, Nathan C., Stergachis, Andrew B., Wang, Hao, Vernot, Benjamin, Garg, Kavita, Sandstrom, Richard, Bates, Daniel, Canfield, Theresa K., Diegel, Morgan, Dunn, Douglas, Ebersol, Abigail K., Frum, Tristan, Giste, Erika, Harding, Lisa, Johnson, Audra K., Johnson, Ericka M., Kutyavin, Tanya, Lajoie, Bryan, Lee, Bum-Kyu, Lee, Kristen, London, Darin, Lotakis, Dimitra, Neph, Shane, Neri, Fidencio, Nguyen, Eric D., Reynolds, Alex P., Roach, Vaughn, Safi, Alexias, Sanchez, Minerva E., Sanyal, Amartya, Shafer, Anthony, Simon, Jeremy M., Song, Lingyun, Vong, Shinny, Weaver, Molly, Zhang, Zhancheng, Zhang, Zhuzhu, Lenhard, Boris, Tewari, Muneesh, Dorschner, Michael O., Hansen, R. Scott, Navas, Patrick A., Stamatoyannopoulos, George, Iyer, Vishwanath R., Lieb, Jason D., Sunyaev, Shamil R., Akey, Joshua M., Sabo, Peter J., Kaul, Rajinder, Furey, Terrence S., Dekker, Job, Crawford, Gregory E., Stamatoyannopoulos, John A.
Publicado em 2012