Complex History of Admixture between Modern Humans and Neandertals

Por Vernot, Benjamin, Akey, Joshua M.
Publicado no Am J Hum Genet (2015)

Reconciliation with Non-Binary Species Trees

Por Vernot, Benjamin, Stolzer, Maureen, Goldman, Aiton, Durand, Dannie
Publicado em 2008

Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees

Por Stolzer, Maureen, Lai, Han, Xu, Minli, Sathaye, Deepa, Vernot, Benjamin, Durand, Dannie
Publicado em 2012

Inferring protein function from homology using the Princeton Protein Orthology Database (P-POD)

Por Livstone, Michael S., Oughtred, Rose, Heinicke, Sven, Vernot, Benjamin, Huttenhower, Curtis, Durand, Dannie, Dolinski, Kara
Publicado em 2011

Personal and population genomics of human regulatory variation

Por Vernot, Benjamin, Stergachis, Andrew B., Maurano, Matthew T., Vierstra, Jeff, Neph, Shane, Thurman, Robert E., Stamatoyannopoulos, John A., Akey, Joshua M.
Publicado em 2012

Exonic transcription factor binding directs codon choice and impacts protein evolution

Por Stergachis, Andrew B., Haugen, Eric, Shafer, Anthony, Fu, Wenqing, Vernot, Benjamin, Reynolds, Alex, Raubitschek, Anthony, Ziegler, Steven, LeProust, Emily M., Akey, Joshua M., Stamatoyannopoulos, John A.
Publicado em 2013

Differences and similarities between human and chimpanzee neural progenitors during cerebral cortex development

Por Mora-Bermúdez, Felipe, Badsha, Farhath, Kanton, Sabina, Camp, J Gray, Vernot, Benjamin, Köhler, Kathrin, Voigt, Birger, Okita, Keisuke, Maricic, Tomislav, He, Zhisong, Lachmann, Robert, Pääbo, Svante, Treutlein, Barbara, Huttner, Wieland B
Publicado no eLife (2016)

Evolutionary history and adaptation from high-coverage whole-genome sequences of diverse African hunter-gatherers

Por Lachance, Joseph, Vernot, Benjamin, Elbers, Clara C., Ferwerda, Bart, Froment, Alain, Bodo, Jean-Marie, Lema, Godfrey, Fu, Wenqing, Nyambo, Thomas B., Rebbeck, Timothy R., Zhang, Kun, Akey, Joshua M., Tishkoff, Sarah A.
Publicado em 2012

Developmental Fate and Cellular Maturity Encoded in Human Regulatory DNA Landscapes

Por Stergachis, Andrew B., Neph, Shane, Reynolds, Alex, Humbert, Richard, Miller, Brady, Paige, Sharon L., Vernot, Benjamin, Cheng, Jeffrey B., Thurman, Robert E., Sandstrom, Richard, Haugen, Eric, Heimfeld, Shelly, Murry, Charles E., Akey, Joshua M., Stamatoyannopoulos, John A.
Publicado em 2013

The phenotypic legacy of admixture between modern humans and Neanderthals

Por Simonti, Corinne N., Vernot, Benjamin, Bastarache, Lisa, Bottinger, Erwin, Carrell, David S., Chisholm, Rex L., Crosslin, David R., Hebbring, Scott J., Jarvik, Gail P., Kullo, Iftikhar J., Li, Rongling, Pathak, Jyotishman, Ritchie, Marylyn D., Roden, Dan M., Verma, Shefali S., Tromp, Gerard, Prato, Jeffrey D., Bush, William S., Akey, Joshua M., Denny, Joshua C., Capra, John A.
Publicado no Science (2016)

Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations

Por O’Roak, Brian J., Vives, Laura, Girirajan, Santhosh, Karakoc, Emre, Krumm, Nik, Coe, Bradley P., Levy, Roie, Ko, Arthur, Lee, Choli, Smith, Joshua D., Turner, Emily H., Stanaway, Ian B., Vernot, Benjamin, Malig, Maika, Baker, Carl, Reilly, Beau, Akey, Joshua M., Borenstein, Elhanan, Rieder, Mark J., Nickerson, Deborah A., Bernier, Raphael, Shendure, Jay, Eichler, Evan E.
Publicado em 2012

An expansive human regulatory lexicon encoded in transcription factor footprints

Por Neph, Shane, Vierstra, Jeff, Stergachis, Andrew B., Reynolds, Alex P., Haugen, Eric, Vernot, Benjamin, Thurman, Robert E., Sandstrom, Richard, Johnson, Audra K., Maurano, Matthew T., Humbert, Richard, Rynes, Eric, Wang, Hao, Vong, Shinny, Lee, Kristen, Bates, Daniel, Diegel, Morgan, Roach, Vaughn, Dunn, Douglas, Neri, Jun, Schafer, Anthony, Hansen, R. Scott, Kutyavin, Tanya, Giste, Erika, Weaver, Molly, Canfield, Theresa, Sabo, Peter, Zhang, Miaohua, Balasundaram, Gayathri, Byron, Rachel, MacCoss, Michael J., Akey, Joshua M., Bender, Michael, Groudine, Mark, Kaul, Rajinder, Stamatoyannopoulos, John A.
Publicado em 2012

The accessible chromatin landscape of the human genome

Por Thurman, Robert E., Rynes, Eric, Humbert, Richard, Vierstra, Jeff, Maurano, Matthew T., Haugen, Eric, Sheffield, Nathan C., Stergachis, Andrew B., Wang, Hao, Vernot, Benjamin, Garg, Kavita, Sandstrom, Richard, Bates, Daniel, Canfield, Theresa K., Diegel, Morgan, Dunn, Douglas, Ebersol, Abigail K., Frum, Tristan, Giste, Erika, Harding, Lisa, Johnson, Audra K., Johnson, Ericka M., Kutyavin, Tanya, Lajoie, Bryan, Lee, Bum-Kyu, Lee, Kristen, London, Darin, Lotakis, Dimitra, Neph, Shane, Neri, Fidencio, Nguyen, Eric D., Reynolds, Alex P., Roach, Vaughn, Safi, Alexias, Sanchez, Minerva E., Sanyal, Amartya, Shafer, Anthony, Simon, Jeremy M., Song, Lingyun, Vong, Shinny, Weaver, Molly, Zhang, Zhancheng, Zhang, Zhuzhu, Lenhard, Boris, Tewari, Muneesh, Dorschner, Michael O., Hansen, R. Scott, Navas, Patrick A., Stamatoyannopoulos, George, Iyer, Vishwanath R., Lieb, Jason D., Sunyaev, Shamil R., Akey, Joshua M., Sabo, Peter J., Kaul, Rajinder, Furey, Terrence S., Dekker, Job, Crawford, Gregory E., Stamatoyannopoulos, John A.
Publicado em 2012