The origin of recurrent translocations in recombining lymphocytes: a balance between break frequency and nuclear proximity

Por Rocha, Pedro P., Skok, Jane A.
Publicado em 2013

Finding the Right Partner in a 3D Genome

Por Rocha, Pedro P., Chaumeil, Julie, Skok, Jane A.
Publicado em 2013

Response to Casellas et al

Por Rocha, Pedro P., Micsinai, Mariann, Kluger, Yuval, Skok, Jane A.
Publicado em 2013

Interpreting 4C-Seq data: how far can we go?

Por Raviram, Ramya, Rocha, Pedro P., Bonneau, Richard, Skok, Jane A.
Publicado no Epigenomics (2014)

Breaking TADs: insights into hierarchical genome organization

Por Rocha, Pedro P., Raviram, Ramya, Bonneau, Richard, Skok, Jane A.
Publicado no Epigenomics (2015)

Correction: Lack of functional and expression homology between human and mouse aldo-keto reductase 1C enzymes: implications for modelling human cancers

Por Schrewe Heinrich, Rocha Pedro P, Davies Nicholas J, Veliça Pedro, Ride Jonathan P, Bunce Chris M
Publicado em 2010-01-01

Lack of functional and expression homology between human and mouse aldo-keto reductase 1C enzymes: implications for modelling human cancers

Por Veliça, Pedro, Davies, Nicholas J, Rocha, Pedro P, Schrewe, Heinrich, Ride, Jonathan P, Bunce, Chris M
Publicado em 2009

Correction: Lack of functional and expression homology between human and mouse aldo-keto reductase 1C enzymes: implications for modelling human cancers

Por Veliça, Pedro, Davies, Nicholas J, Rocha, Pedro P, Schrewe, Heinrich, Ride, Jonathan P, Bunce, Chris M
Publicado em 2010

CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation

Por Narendra, Varun, Rocha, Pedro P., An, Disi, Raviram, Ramya, Skok, Jane A., Mazzoni, Esteban O., Reinberg, Danny
Publicado no Science (2015)

CRISPR-dCas9 and sgRNA scaffolds enable dual-colour live imaging of satellite sequences and repeat-enriched individual loci

Por Fu, Yi, Rocha, Pedro P., Luo, Vincent M., Raviram, Ramya, Deng, Yan, Mazzoni, Esteban O., Skok, Jane A.
Publicado no Nat Commun (2016)

Identification of multi-loci hubs from 4C-seq demonstrates the functional importance of simultaneous interactions

Por Jiang, Tingting, Raviram, Ramya, Snetkova, Valentina, Rocha, Pedro P., Proudhon, Charlotte, Badri, Sana, Bonneau, Richard, Skok, Jane A., Kluger, Yuval
Publicado no Nucleic Acids Res (2016)

Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate

Por Raviram, Ramya, Rocha, Pedro P., Luo, Vincent M., Swanzey, Emily, Miraldi, Emily R., Chuong, Edward B., Feschotte, Cédric, Bonneau, Richard, Skok, Jane A.
Publicado no Genome Biol (2018)

Close proximity to Igh is a contributing factor to AID mediated translocations

Por Rocha, Pedro P., Micsinai, Mariann, Kim, JungHyun Rachel, Hewitt, Susannah L., Souza, Patricia P., Trimarchi, Thomas, Strino, Francesco, Parisi, Fabio, Kluger, Yuval, Skok, Jane A.
Publicado em 2012

4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments

Por Raviram, Ramya, Rocha, Pedro P., Müller, Christian L., Miraldi, Emily R., Badri, Sana, Fu, Yi, Swanzey, Emily, Proudhon, Charlotte, Snetkova, Valentina, Bonneau, Richard, Skok, Jane A.
Publicado no PLoS Comput Biol (2016)

Capturing the Onset of PRC2-Mediated Repressive Domain Formation

Por Oksuz, Ozgur, Narendra, Varun, Lee, Chul-Hwan, Descostes, Nicolas, LeRoy, Gary, Raviram, Ramya, Blumenberg, Lili, Karch, Kelly, Rocha, Pedro P., Garcia, Benjamin A., Skok, Jane A., Reinberg, Danny
Publicado no Mol Cell (2018)

Mediator facilitates transcriptional activation and dynamic long-range contacts at the IgH locus during class switch recombination

Por Thomas-Claudepierre, Anne-Sophie, Robert, Isabelle, Rocha, Pedro P., Raviram, Ramya, Schiavo, Ebe, Heyer, Vincent, Bonneau, Richard, Luo, Vincent M., Reddy, Janardan K., Borggrefe, Tilman, Skok, Jane A., Reina-San-Martin, Bernardo
Publicado no J Exp Med (2016)

A Damage-Independent Role for 53BP1 that Impacts Break Order and Igh Architecture during Class Switch Recombination

Por Rocha, Pedro P., Raviram, Ramya, Fu, Yi, Kim, JungHyun, Luo, Vincent M., Aljoufi, Arafat, Swanzey, Emily, Pasquarella, Alessandra, Balestrini, Alessia, Miraldi, Emily R., Bonneau, Richard, Petrini, John, Schotta, Gunnar, Skok, Jane A.
Publicado no Cell Rep (2016)

Cohesin loss alters adult hematopoietic stem cell homeostasis, leading to myeloproliferative neoplasms

Por Mullenders, Jasper, Aranda-Orgilles, Beatriz, Lhoumaud, Priscillia, Keller, Matthew, Pae, Juhee, Wang, Kun, Kayembe, Clarisse, Rocha, Pedro P., Raviram, Ramya, Gong, Yixiao, Premsrirut, Prem K., Tsirigos, Aristotelis, Bonneau, Richard, Skok, Jane A., Cimmino, Luisa, Hoehn, Daniela, Aifantis, Iannis
Publicado no J Exp Med (2015)

Wolf-Hirschhorn Syndrome Candidate-1 is necessary for correct hematopoietic and B cell development

Por Campos-Sanchez, Elena, Deleyto-Seldas, Nerea, Dominguez, Veronica, Carrillo-de-Santa-Pau, Enrique, Ura, Kiyoe, Rocha, Pedro P., Kim, JungHyun, Aljoufi, Arafat, Esteve-Codina, Anna, Dabad, Marc, Gut, Marta, Heyn, Holger, Kaneda, Yasufumi, Nimura, Keisuke, Skok, Jane A., Martinez-Frias, Maria Luisa, Cobaleda, Cesar
Publicado no Cell Rep (2017)

Gata3-controlled nucleosome eviction drives Myc enhancer activity in T-cell development and leukemia

Por Belver, Laura, Yang, Alexander Y., Albero, Robert, Herranz, Daniel, Brundu, Francesco G., Quinn, S. Aidan, Pérez-Durán, Pablo, Álvarez, Silvia, Gianni, Francesca, Rashkovan, Marissa, Gurung, Devya, Rocha, Pedro P., Raviram, Ramya, Reglero, Clara, Cortés, Jose R., Cooke, Anisha J., Wendorff, Agnieszka A., Cordó, Valentina, Meijerink, Jules P., Rabadan, Raúl, Ferrando, Adolfo A.
Publicado no Cancer Discov (2019)