The origin of recurrent translocations in recombining lymphocytes: a balance between break frequency and nuclear proximity

door Rocha, Pedro P., Skok, Jane A.
Gepubliceerd in 2013

Finding the Right Partner in a 3D Genome

door Rocha, Pedro P., Chaumeil, Julie, Skok, Jane A.
Gepubliceerd in 2013

Response to Casellas et al

door Rocha, Pedro P., Micsinai, Mariann, Kluger, Yuval, Skok, Jane A.
Gepubliceerd in 2013

Interpreting 4C-Seq data: how far can we go?

door Raviram, Ramya, Rocha, Pedro P., Bonneau, Richard, Skok, Jane A.
Gepubliceerd in Epigenomics (2014)

Breaking TADs: insights into hierarchical genome organization

door Rocha, Pedro P., Raviram, Ramya, Bonneau, Richard, Skok, Jane A.
Gepubliceerd in Epigenomics (2015)

Correction: Lack of functional and expression homology between human and mouse aldo-keto reductase 1C enzymes: implications for modelling human cancers

door Schrewe Heinrich, Rocha Pedro P, Davies Nicholas J, Veliça Pedro, Ride Jonathan P, Bunce Chris M
Gepubliceerd in 2010-01-01

Lack of functional and expression homology between human and mouse aldo-keto reductase 1C enzymes: implications for modelling human cancers

door Veliça, Pedro, Davies, Nicholas J, Rocha, Pedro P, Schrewe, Heinrich, Ride, Jonathan P, Bunce, Chris M
Gepubliceerd in 2009

Correction: Lack of functional and expression homology between human and mouse aldo-keto reductase 1C enzymes: implications for modelling human cancers

door Veliça, Pedro, Davies, Nicholas J, Rocha, Pedro P, Schrewe, Heinrich, Ride, Jonathan P, Bunce, Chris M
Gepubliceerd in 2010

CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation

door Narendra, Varun, Rocha, Pedro P., An, Disi, Raviram, Ramya, Skok, Jane A., Mazzoni, Esteban O., Reinberg, Danny
Gepubliceerd in Science (2015)

CRISPR-dCas9 and sgRNA scaffolds enable dual-colour live imaging of satellite sequences and repeat-enriched individual loci

door Fu, Yi, Rocha, Pedro P., Luo, Vincent M., Raviram, Ramya, Deng, Yan, Mazzoni, Esteban O., Skok, Jane A.
Gepubliceerd in Nat Commun (2016)

Identification of multi-loci hubs from 4C-seq demonstrates the functional importance of simultaneous interactions

door Jiang, Tingting, Raviram, Ramya, Snetkova, Valentina, Rocha, Pedro P., Proudhon, Charlotte, Badri, Sana, Bonneau, Richard, Skok, Jane A., Kluger, Yuval
Gepubliceerd in Nucleic Acids Res (2016)

Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate

door Raviram, Ramya, Rocha, Pedro P., Luo, Vincent M., Swanzey, Emily, Miraldi, Emily R., Chuong, Edward B., Feschotte, Cédric, Bonneau, Richard, Skok, Jane A.
Gepubliceerd in Genome Biol (2018)

Close proximity to Igh is a contributing factor to AID mediated translocations

door Rocha, Pedro P., Micsinai, Mariann, Kim, JungHyun Rachel, Hewitt, Susannah L., Souza, Patricia P., Trimarchi, Thomas, Strino, Francesco, Parisi, Fabio, Kluger, Yuval, Skok, Jane A.
Gepubliceerd in 2012

4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments

door Raviram, Ramya, Rocha, Pedro P., Müller, Christian L., Miraldi, Emily R., Badri, Sana, Fu, Yi, Swanzey, Emily, Proudhon, Charlotte, Snetkova, Valentina, Bonneau, Richard, Skok, Jane A.
Gepubliceerd in PLoS Comput Biol (2016)

Capturing the Onset of PRC2-Mediated Repressive Domain Formation

door Oksuz, Ozgur, Narendra, Varun, Lee, Chul-Hwan, Descostes, Nicolas, LeRoy, Gary, Raviram, Ramya, Blumenberg, Lili, Karch, Kelly, Rocha, Pedro P., Garcia, Benjamin A., Skok, Jane A., Reinberg, Danny
Gepubliceerd in Mol Cell (2018)

Mediator facilitates transcriptional activation and dynamic long-range contacts at the IgH locus during class switch recombination

door Thomas-Claudepierre, Anne-Sophie, Robert, Isabelle, Rocha, Pedro P., Raviram, Ramya, Schiavo, Ebe, Heyer, Vincent, Bonneau, Richard, Luo, Vincent M., Reddy, Janardan K., Borggrefe, Tilman, Skok, Jane A., Reina-San-Martin, Bernardo
Gepubliceerd in J Exp Med (2016)

A Damage-Independent Role for 53BP1 that Impacts Break Order and Igh Architecture during Class Switch Recombination

door Rocha, Pedro P., Raviram, Ramya, Fu, Yi, Kim, JungHyun, Luo, Vincent M., Aljoufi, Arafat, Swanzey, Emily, Pasquarella, Alessandra, Balestrini, Alessia, Miraldi, Emily R., Bonneau, Richard, Petrini, John, Schotta, Gunnar, Skok, Jane A.
Gepubliceerd in Cell Rep (2016)

Cohesin loss alters adult hematopoietic stem cell homeostasis, leading to myeloproliferative neoplasms

door Mullenders, Jasper, Aranda-Orgilles, Beatriz, Lhoumaud, Priscillia, Keller, Matthew, Pae, Juhee, Wang, Kun, Kayembe, Clarisse, Rocha, Pedro P., Raviram, Ramya, Gong, Yixiao, Premsrirut, Prem K., Tsirigos, Aristotelis, Bonneau, Richard, Skok, Jane A., Cimmino, Luisa, Hoehn, Daniela, Aifantis, Iannis
Gepubliceerd in J Exp Med (2015)

Wolf-Hirschhorn Syndrome Candidate-1 is necessary for correct hematopoietic and B cell development

door Campos-Sanchez, Elena, Deleyto-Seldas, Nerea, Dominguez, Veronica, Carrillo-de-Santa-Pau, Enrique, Ura, Kiyoe, Rocha, Pedro P., Kim, JungHyun, Aljoufi, Arafat, Esteve-Codina, Anna, Dabad, Marc, Gut, Marta, Heyn, Holger, Kaneda, Yasufumi, Nimura, Keisuke, Skok, Jane A., Martinez-Frias, Maria Luisa, Cobaleda, Cesar
Gepubliceerd in Cell Rep (2017)

Gata3-controlled nucleosome eviction drives Myc enhancer activity in T-cell development and leukemia

door Belver, Laura, Yang, Alexander Y., Albero, Robert, Herranz, Daniel, Brundu, Francesco G., Quinn, S. Aidan, Pérez-Durán, Pablo, Álvarez, Silvia, Gianni, Francesca, Rashkovan, Marissa, Gurung, Devya, Rocha, Pedro P., Raviram, Ramya, Reglero, Clara, Cortés, Jose R., Cooke, Anisha J., Wendorff, Agnieszka A., Cordó, Valentina, Meijerink, Jules P., Rabadan, Raúl, Ferrando, Adolfo A.
Gepubliceerd in Cancer Discov (2019)