Identifying (non-)coding RNAs and small peptides: Challenges and opportunities

le Pauli, Andrea, Valen, Eivind, Schier, Alexander F.
Foilsithe in Bioessays (2014)

Non-coding RNAs as regulators of embryogenesis

le Pauli, Andrea, Rinn, John L., Schier, Alexander F.
Foilsithe 2011

Conservation of uORF repressiveness and sequence features in mouse, human and zebrafish

le Chew, Guo-Liang, Pauli, Andrea, Schier, Alexander F.
Foilsithe in Nat Commun (2016)

Decoding sORF translation – from small proteins to gene regulation

le Cabrera-Quio, Luis Enrique, Herberg, Sarah, Pauli, Andrea
Foilsithe in RNA Biol (2016)

The Ly6/uPAR protein Bouncer is necessary and sufficient for species-specific fertilization

le Herberg, Sarah, Gert, Krista R., Schleiffer, Alexander, Pauli, Andrea
Foilsithe in Science (2018)

Zebrafish Ski7 tunes RNA levels during the oocyte-to-embryo transition

le Cabrera-Quio, Luis Enrique, Schleiffer, Alexander, Mechtler, Karl, Pauli, Andrea
Foilsithe in PLoS Genet (2021)

Cohesin cleavage and Cdk inhibition trigger formation of daughter nuclei

le Oliveira, Raquel A., Hamilton, Russell S., Pauli, Andrea, Davis, Ilan, Nasmyth, Kim
Foilsithe 2010

Systematic refinement of gene annotations by parsing mRNA 3′ end sequencing datasets

le Bhat, Pooja, Burkard, Thomas R., Herzog, Veronika A., Pauli, Andrea, Ameres, Stefan L.
Foilsithe in Methods Enzymol (2021)

Polycomb purification by in vivo biotinylation tagging reveals cohesin and Trithorax group proteins as interaction partners

le Strübbe, Gero, Popp, Christian, Schmidt, Alexander, Pauli, Andrea, Ringrose, Leonie, Beisel, Christian, Paro, Renato
Foilsithe 2011

Antisense Oligonucleotide-Mediated Transcript Knockdown in Zebrafish

le Pauli, Andrea, Montague, Tessa G., Lennox, Kim A., Behlke, Mark A., Schier, Alexander F.
Foilsithe in PLoS One (2015)

Ribosome profiling reveals resemblance between long non-coding RNAs and 5′ leaders of coding RNAs

le Chew, Guo-Liang, Pauli, Andrea, Rinn, John L., Regev, Aviv, Schier, Alexander F., Valen, Eivind
Foilsithe 2013

Formation and Nuclear Export of Preribosomes Are Functionally Linked to the Small-Ubiquitin-Related Modifier Pathway

le Panse, Vikram Govind, Kressler, Dieter, Pauli, Andrea, Petfalski, Elisabeth, Gnädig, Maren, Tollervey, David, Hurt, Ed
Foilsithe in Traffic (2006)

A Direct Role for Cohesin in Gene Regulation and Ecdysone Response in Drosophila Salivary Glands

le Pauli, Andrea, van Bemmel, Joke G., Oliveira, Raquel A., Itoh, Takehiko, Shirahige, Katsuhiko, van Steensel, Bas, Nasmyth, Kim
Foilsithe in Curr Biol (2010)

Cell-Type-Specific TEV Protease Cleavage Reveals Cohesin Functions in Drosophila Neurons

le Pauli, Andrea, Althoff, Friederike, Oliveira, Raquel A., Heidmann, Stefan, Schuldiner, Oren, Lehner, Christian F., Dickson, Barry J., Nasmyth, Kim
Foilsithe 2008

Toddler signaling regulates mesodermal cell migration downstream of Nodal signaling

le Norris, Megan L, Pauli, Andrea, Gagnon, James A, Lord, Nathan D, Rogers, Katherine W, Mosimann, Christian, Zon, Leonard I, Schier, Alexander F
Foilsithe in eLife (2017)

Canonical nucleosome organization at promoters forms during genome activation

le Zhang, Yong, Vastenhouw, Nadine L., Feng, Jianxing, Fu, Kai, Wang, Chenfei, Ge, Ying, Pauli, Andrea, van Hummelen, Paul, Schier, Alexander F., Liu, X. Shirley
Foilsithe 2014

Efficient Mutagenesis by Cas9 Protein-Mediated Oligonucleotide Insertion and Large-Scale Assessment of Single-Guide RNAs

le Gagnon, James A., Valen, Eivind, Thyme, Summer B., Huang, Peng, Ahkmetova, Laila, Pauli, Andrea, Montague, Tessa G., Zimmerman, Steven, Richter, Constance, Schier, Alexander F.
Foilsithe 2014

Selective Roles of Vertebrate PCF11 in Premature and Full-Length Transcript Termination

le Kamieniarz-Gdula, Kinga, Gdula, Michal R., Panser, Karin, Nojima, Takayuki, Monks, Joan, Wiśniewski, Jacek R., Riepsaame, Joey, Brockdorff, Neil, Pauli, Andrea, Proudfoot, Nick J.
Foilsithe in Mol Cell (2019)

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

le Pauli, Andrea, Valen, Eivind, Lin, Michael F., Garber, Manuel, Vastenhouw, Nadine L., Levin, Joshua Z., Fan, Lin, Sandelin, Albin, Rinn, John L., Regev, Aviv, Schier, Alexander F.
Foilsithe 2012

Loss of Apela peptide in mice causes low penetrance embryonic lethality and defects in early mesodermal derivatives

le Freyer, Laina, Hsu, Chih-Wei, Nowotschin, Sonja, Pauli, Andrea, Ishida, Junji, Kuba, Keiji, Fukamizu, Akiyoshi, Schier, Alexander F., Hoodless, Pamela A., Dickinson, Mary E., Hadjantonakis, Anna-Katerina
Foilsithe in Cell Rep (2017)