Riding in silence: a little snowboarding, a lot of small RNAs

door Ameres, Stefan L, Fukunaga, Ryuya
Gepubliceerd in 2010

Determining mRNA stability by metabolic RNA labeling and chemical nucleoside conversion

door Herzog, Veronika A., Fasching, Nina, Ameres, Stefan L.
Gepubliceerd in Methods Mol Biol (2020)

Cleavage of the siRNA passenger strand during RISC assembly in human cells

door Leuschner, Philipp J F, Ameres, Stefan L, Kueng, Stephanie, Martinez, Javier
Gepubliceerd in 2006

RNA chaperone activity of L1 ribosomal proteins: phylogenetic conservation and splicing inhibition

door Ameres, Stefan L., Shcherbakov, Dmitry, Nikonova, Ekaterina, Piendl, Wolfgang, Schroeder, Renée, Semrad, Katharina
Gepubliceerd in 2007

Target RNA-directed tailing and trimming purifies the sorting of endo-siRNAs between the two Drosophila Argonaute proteins

door Ameres, Stefan L., Hung, Jui-Hung, Xu, Jia, Weng, Zhiping, Zamore, Phillip D.
Gepubliceerd in 2011

Genetic and mechanistic diversity of piRNA 3' end formation

door Hayashi, Rippei, Schnabl, Jakob, Handler, Dominik, Mohn, Fabio, Ameres, Stefan L., Brennecke, Julius
Gepubliceerd in Nature (2016)

Structural basis for acceptor RNA substrate selectivity of the 3′ terminal uridylyl transferase Tailor

door Kroupova, Alena, Ivaşcu, Anastasia, Reimão-Pinto, Madalena M, Ameres, Stefan L, Jinek, Martin
Gepubliceerd in Nucleic Acids Res (2019)

Systematic refinement of gene annotations by parsing mRNA 3′ end sequencing datasets

door Bhat, Pooja, Burkard, Thomas R., Herzog, Veronika A., Pauli, Andrea, Ameres, Stefan L.
Gepubliceerd in Methods Enzymol (2021)

The 3-to-5 Exoribonuclease Knabber Shapes the 32 Ends of MicroRNAs Bound to Drosophila Argonaute1

door Han, Bo W., Hung, Jui-Hung, Weng, Zhiping, Zamore, Phillip D., Ameres, Stefan L.
Gepubliceerd in 2011

Time-resolved small RNA sequencing unravels the molecular principles of microRNA homeostasis

door Reichholf, Brian, Herzog, Veronika A., Fasching, Nina, Manzenreither, Raphael A., Sowemimo, Ivica, Ameres, Stefan L.
Gepubliceerd in Mol Cell (2019)

SLAM-ITseq: sequencing cell type-specific transcriptomes without cell sorting

door Matsushima, Wayo, Herzog, Veronika A., Neumann, Tobias, Gapp, Katharina, Zuber, Johannes, Ameres, Stefan L., Miska, Eric A.
Gepubliceerd in Development (2018)

Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets

door Neumann, Tobias, Herzog, Veronika A., Muhar, Matthias, von Haeseler, Arndt, Zuber, Johannes, Ameres, Stefan L., Rescheneder, Philipp
Gepubliceerd in BMC Bioinformatics (2019)

Sequencing cell type-specific transcriptomes with SLAM-ITseq

door Matsushima, Wayo, Herzog, Veronika A, Neumann, Tobias, Gapp, Katharina, Zuber, Johannes, Ameres, Stefan L, Miska, Eric A
Gepubliceerd in Nat Protoc (2019)

Target RNA-directed trimming and tailing of small silencing RNAs

door Ameres, Stefan L., Horwich, Michael D., Hung, Jui-Hung, Xu, Jia, Ghildiyal, Megha, Weng, Zhiping, Zamore, Phillip D.
Gepubliceerd in 2010

Molecular basis for cytoplasmic RNA surveillance by uridylation‐triggered decay in Drosophila

door Reimão‐Pinto, Madalena M, Manzenreither, Raphael A, Burkard, Thomas R, Sledz, Pawel, Jinek, Martin, Mechtler, Karl, Ameres, Stefan L
Gepubliceerd in EMBO J (2016)

Cell-type specific sequencing of microRNAs from complex animal tissues

door Alberti, Chiara, Manzenreither, Raphael A., Sowemimo, Ivica, Burkard, Thomas R., Wang, Jingkui, Mahofsky, Katharina, Ameres, Stefan L., Cochella, Luisa
Gepubliceerd in Nat Methods (2018)

Structure-function analysis of microRNA 3′-end trimming by Nibbler

door Xie, Wei, Sowemimo, Ivica, Hayashi, Rippei, Wang, Juncheng, Burkard, Thomas R., Brennecke, Julius, Ameres, Stefan L., Patel, Dinshaw J.
Gepubliceerd in Proc Natl Acad Sci U S A (2020)

Selective suppression of the splicing-mediated microRNA pathway by the terminal uridyltransferase Tailor

door Bortolamiol-Becet, Diane, Hu, Fuqu, Jee, David, Wen, Jiayu, Okamura, Katsutomo, Lin, Ching-Jung, Ameres, Stefan L., Lai, Eric C.
Gepubliceerd in Mol Cell (2015)

Small RNAs are trafficked from the epididymis to developing mammalian sperm

door Sharma, Upasna, Sun, Fengyun, Conine, Colin C., Reichholf, Brian, Kukreja, Shweta, Herzog, Veronika A., Ameres, Stefan L., Rando, Oliver J.
Gepubliceerd in Dev Cell (2018)

Thiol-linked alkylation of RNA to assess expression dynamics

door Herzog, Veronika A., Reichholf, Brian, Neumann, Tobias, Rescheneder, Philipp, Bhat, Pooja, Burkard, Thomas R., Wlotzka, Wiebke, von Haeseler, Arndt, Zuber, Johannes, Ameres, Stefan L.
Gepubliceerd in Nat Methods (2017)