Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Por Love, Michael I, Huber, Wolfgang, Anders, Simon
Publicado no Genome Biol (2014)

Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences

Por Soneson, Charlotte, Love, Michael I., Robinson, Mark D.
Publicado no F1000Res (2016)

RNA-Seq workflow: gene-level exploratory analysis and differential expression

Por Love, Michael I., Anders, Simon, Kim, Vladislav, Huber, Wolfgang
Publicado no F1000Res (2015)

Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation

Por Love, Michael I., Hogenesch, John B., Irizarry, Rafael A.
Publicado no Nat Biotechnol (2016)

Modeling Read Counts for CNV Detection in Exome Sequencing Data

Por Love, Michael I., Myšičková, Alena, Sun, Ruping, Kalscheuer, Vera, Vingron, Martin, Haas, Stefan A.
Publicado em 2011

TRPM2 mediates ischemic kidney injury and oxidant stress through RAC1

Por Gao, Guofeng, Wang, Weiwei, Tadagavadi, Raghu K., Briley, Nicole E., Love, Michael I., Miller, Barbara A., Reeves, W. Brian
Publicado no J Clin Invest (2014)

MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens

Por Li, Wei, Xu, Han, Xiao, Tengfei, Cong, Le, Love, Michael I, Zhang, Feng, Irizarry, Rafael A, Liu, Jun S, Brown, Myles, Liu, X Shirley
Publicado no Genome Biol (2014)

Flexible expressed region analysis for RNA-seq with derfinder

Por Collado-Torres, Leonardo, Nellore, Abhinav, Frazee, Alyssa C., Wilks, Christopher, Love, Michael I., Langmead, Ben, Irizarry, Rafael A., Leek, Jeffrey T., Jaffe, Andrew E.
Publicado no Nucleic Acids Res (2017)

ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors

Por Starick, Stephan R., Ibn-Salem, Jonas, Jurk, Marcel, Hernandez, Céline, Love, Michael I., Chung, Ho-Ryun, Vingron, Martin, Thomas-Chollier, Morgane, Meijsing, Sebastiaan H.
Publicado no Genome Res (2015)

Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation

Por Love, Michael I., Huska, Matthew R., Jurk, Marcel, Schöpflin, Robert, Starick, Stephan R., Schwahn, Kevin, Cooper, Samantha B., Yamamoto, Keith R., Thomas-Chollier, Morgane, Vingron, Martin, Meijsing, Sebastiaan H.
Publicado no Nucleic Acids Res (2017)

A benchmark for RNA-seq quantification pipelines

Por Teng, Mingxiang, Love, Michael I., Davis, Carrie A., Djebali, Sarah, Dobin, Alexander, Graveley, Brenton R., Li, Sheng, Mason, Christopher E., Olson, Sara, Pervouchine, Dmitri, Sloan, Cricket A., Wei, Xintao, Zhan, Lijun, Irizarry, Rafael A.
Publicado no Genome Biol (2016)

Erratum to: A benchmark for RNA-seq quantification pipelines

Por Teng, Mingxiang, Love, Michael I., Davis, Carrie A., Djebali, Sarah, Dobin, Alexander, Graveley, Brenton R., Li, Sheng, Mason, Christopher E., Olson, Sara, Pervouchine, Dmitri, Sloan, Cricket A., Wei, Xintao, Zhan, Lijun, Irizarry, Rafael A.
Publicado no Genome Biol (2016)

Erratum to: A benchmark for RNA-seq quantification pipelines

Por Teng, Mingxiang, Love, Michael I., Davis, Carrie A., Djebali, Sarah, Dobin, Alexander, Graveley, Brenton R., Li, Sheng, Mason, Christopher E., Olson, Sara, Pervouchine, Dmitri, Sloan, Cricket A., Wei, Xintao, Zhan, Lijun, Irizarry, Rafael A.
Publicado no Genome Biol (2016)

Deletions of chromosomal regulatory boundaries are associated with congenital disease

Por Ibn-Salem, Jonas, Köhler, Sebastian, Love, Michael I, Chung, Ho-Ryun, Huang, Ni, Hurles, Matthew E, Haendel, Melissa, Washington, Nicole L, Smedley, Damian, Mungall, Christopher J, Lewis, Suzanna E, Ott, Claus-Eric, Bauer, Sebastian, Schofield, Paul N, Mundlos, Stefan, Spielmann, Malte, Robinson, Peter N
Publicado em 2014

Airway Epithelial miRNA Expression Is Altered in Asthma

Por Solberg, Owen D., Ostrin, Edwin J., Love, Michael I., Peng, Jeffrey C., Bhakta, Nirav R., Hou, Lydia, Nguyen, Christine, Solon, Margaret, Nguyen, Cindy, Barczak, Andrea J., Zlock, Lorna T., Blagev, Denitza P., Finkbeiner, Walter E., Ansel, K. Mark, Arron, Joseph R., Erle, David J., Woodruff, Prescott G.
Publicado em 2012

Orchestrating high-throughput genomic analysis with Bioconductor

Por Huber, Wolfgang, Carey, Vincent J., Gentleman, Robert, Anders, Simon, Carlson, Marc, Carvalho, Benilton S., Bravo, Hector Corrada, Davis, Sean, Gatto, Laurent, Girke, Thomas, Gottardo, Raphael, Hahne, Florian, Hansen, Kasper D., Irizarry, Rafael A., Lawrence, Michael, Love, Michael I., MacDonald, James, Obenchain, Valerie, Oleś, Andrzej K., Pagès, Hervé, Reyes, Alejandro, Shannon, Paul, Smyth, Gordon K., Tenenbaum, Dan, Waldron, Levi, Morgan, Martin
Publicado no Nat Methods (2015)