Evaluating Alternate Methods of Determining the Antimicrobial Efficacy of Contact Lens Care Products against Acanthamoeba Trophozoites

door Campolo, Allison, Shannon, Paul, Crary, Monica
Gepubliceerd in Pathogens (2021)

The Gaggle: An open-source software system for integrating bioinformatics software and data sources

door Shannon, Paul T, Reiss, David J, Bonneau, Richard, Baliga, Nitin S
Gepubliceerd in 2006

The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications

door Bare, J Christopher, Shannon, Paul T, Schmid, Amy K, Baliga, Nitin S
Gepubliceerd in 2007

CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful API

door Ono, Keiichiro, Muetze, Tanja, Kolishovski, Georgi, Shannon, Paul, Demchak, Barry
Gepubliceerd in F1000Res (2015)

Variables Affecting the Recovery of Acanthamoeba Trophozoites

door Crary, Monica J., Walters, Rhonda, Shannon, Paul, Gabriel, Manal M.
Gepubliceerd in Pathogens (2021)

Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1

door Bonneau, Richard, Baliga, Nitin S, Deutsch, Eric W, Shannon, Paul, Hood, Leroy
Gepubliceerd in 2004

GeneClinics: A Hybrid Text/Data Electronic Publishing Model Using XML Applied to Clinical Genetic Testing

door Tarczy-Hornoch, Peter, Shannon, Paul, Baskin, Patty, Espeseth, Miriam, Pagon, Roberta A.
Gepubliceerd in 2000

Wrangling Phosphoproteomic Data to Elucidate Cancer Signaling Pathways

door Grimes, Mark L., Lee, Wan-Jui, van der Maaten, Laurens, Shannon, Paul
Gepubliceerd in 2013

RCytoscape: tools for exploratory network analysis

door Shannon, Paul T, Grimes, Mark, Kutlu, Burak, Bot, Jan J, Galas, David J
Gepubliceerd in 2013

VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants

door Obenchain, Valerie, Lawrence, Michael, Carey, Vincent, Gogarten, Stephanie, Shannon, Paul, Morgan, Martin
Gepubliceerd in 2014

The Protein Information and Property Explorer 2: Gaggle-like exploration of biological proteomic data within one webpage

door Ramos, Hector, Shannon, Paul, Brusniak, Mi-Youn, Kusebauch, Ulrike, Moritz, Robert L., Aebersold, Ruedi
Gepubliceerd in 2010

The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo

door Bonneau, Richard, Reiss, David J, Shannon, Paul, Facciotti, Marc, Hood, Leroy, Baliga, Nitin S, Thorsson, Vesteinn
Gepubliceerd in 2006

Treatment satisfaction in cystic fibrosis: early patient experience with tobramycin inhalation powder

door Greenberg, Jonathan, Palmer, Jacqueline B, Chan, Wing W, Correia, Catherine E, Whalley, Diane, Shannon, Paul, Sawicki, Gregory S
Gepubliceerd in Patient Prefer Adherence (2016)

Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks

door Shannon, Paul, Markiel, Andrew, Ozier, Owen, Baliga, Nitin S., Wang, Jonathan T., Ramage, Daniel, Amin, Nada, Schwikowski, Benno, Ideker, Trey
Gepubliceerd in 2003

Derivation of genetic interaction networks from quantitative phenotype data

door Drees, Becky L, Thorsson, Vesteinn, Carter, Gregory W, Rives, Alexander W, Raymond, Marisa Z, Avila-Campillo, Iliana, Shannon, Paul, Galitski, Timothy
Gepubliceerd in 2005

Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach

door Baliga, Nitin S., Pan, Min, Goo, Young Ah, Yi, Eugene C., Goodlett, David R., Dimitrov, Krassen, Shannon, Paul, Aebersold, Ruedi, Ng, Wailap Victor, Hood, Leroy
Gepubliceerd in 2002

General transcription factor specified global gene regulation in archaea

door Facciotti, Marc T., Reiss, David J., Pan, Min, Kaur, Amardeep, Vuthoori, Madhavi, Bonneau, Richard, Shannon, Paul, Srivastava, Alok, Donohoe, Samuel M., Hood, Leroy E., Baliga, Nitin S.
Gepubliceerd in 2007

Single-Cell Proteomics Reveal that Quantitative Changes in Co-expressed Lineage-Specific Transcription Factors Determine Cell Fate

door Palii, Carmen G., Cheng, Qian, Gillespie, Mark A., Shannon, Paul, Mazurczyk, Michalina, Napolitani, Giorgio, Price, Nathan D., Ranish, Jeffrey A., Morrissey, Edward, Higgs, Douglas R., Brand, Marjorie
Gepubliceerd in Cell Stem Cell (2019)

Integrated Phosphoproteomics Analysis of a Signaling Network Governing Nutrient Response and Peroxisome Induction

door Saleem, Ramsey A., Rogers, Richard S., Ratushny, Alexander V., Dilworth, David J., Shannon, Paul T., Shteynberg, David, Wan, Yakun, Moritz, Robert L., Nesvizhskii, Alexey I., Rachubinski, Richard A., Aitchison, John D.
Gepubliceerd in 2010

PhosphoPep—a phosphoproteome resource for systems biology research in Drosophila Kc167 cells

door Bodenmiller, Bernd, Malmstrom, Johan, Gerrits, Bertran, Campbell, David, Lam, Henry, Schmidt, Alexander, Rinner, Oliver, Mueller, Lukas N, Shannon, Paul T, Pedrioli, Patrick G, Panse, Christian, Lee, Hoo-Keun, Schlapbach, Ralph, Aebersold, Ruedi
Gepubliceerd in 2007