The Protein Information and Property Explorer 2: Gaggle-like exploration of biological proteomic data within one webpage

Por Ramos, Hector, Shannon, Paul, Brusniak, Mi-Youn, Kusebauch, Ulrike, Moritz, Robert L., Aebersold, Ruedi
Publicado em 2010

Using PeptideAtlas, SRMAtlas and PASSEL – Comprehensive Resources for discovery and targeted proteomics

Por Kusebauch, Ulrike, Deutsch, Eric W., Campbell, David S., Sun, Zhi, Farrah, Terry, Moritz, Robert L.
Publicado no Curr Protoc Bioinformatics (2014)

Decreased gap width in a cylindrical FAIMS device improves protein discovery

Por Swearingen, Kristian E., Winget, Jason M., Hoopmann, Michael R., Kusebauch, Ulrike, Moritz, Robert L.
Publicado no Anal Chem (2015)

Opening a SWATH Window on Posttranslational Modifications: Automated Pursuit of Modified Peptides

Por Keller, Andrew, Bader, Samuel L., Kusebauch, Ulrike, Shteynberg, David, Hood, Leroy, Moritz, Robert L.
Publicado no Mol Cell Proteomics (2016)

Quantitative Proteomic Analysis Reveals Effects of Epidermal Growth Factor Receptor (EGFR) on Invasion-promoting Proteins Secreted by Glioblastoma Cells

Por Sangar, Vineet, Funk, Cory C., Kusebauch, Ulrike, Campbell, David S., Moritz, Robert L., Price, Nathan D.
Publicado em 2014

Mycobacterium tuberculosis supports protein tyrosine phosphorylation

Por Kusebauch, Ulrike, Ortega, Corrie, Ollodart, Anja, Rogers, Richard S., Sherman, David R., Moritz, Robert L., Grundner, Christoph
Publicado em 2014

An Assessment of Current Bioinformatic Solutions for Analyzing LC-MS data Acquired by Selected Reaction Monitoring Technology

Por Brusniak, Mi-Youn K., Chu, Caroline S., Kusebauch, Ulrike, Sartain, Mark J., Watts, Julian D., Moritz, Robert L.
Publicado em 2012

The State of the Human Proteome in 2014/2015 as viewed through PeptideAtlas: enhancing accuracy and coverage through the AtlasProphet

Por Deutsch, Eric W., Sun, Zhi, Campbell, David, Kusebauch, Ulrike, Chu, Caroline S., Mendoza, Luis, Shteynberg, David, Omenn, Gilbert S., Moritz, Robert L.
Publicado no J Proteome Res (2015)

Quantotypic properties of QconCAT peptides targeting bovine host response to Streptococcus uberis

Por Bislev, Stine L., Kusebauch, Ulrike, Codrea, Marius C., Beynon, Robert J., Harman, Victoria M., Røntved, Christine M., Aebersold, Ruedi, Moritz, Robert L., Bendixen, Emøke
Publicado em 2012

ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry

Por Brusniak, Mi-Youn K, Kwok, Sung-Tat, Christiansen, Mark, Campbell, David, Reiter, Lukas, Picotti, Paola, Kusebauch, Ulrike, Ramos, Hector, Deutsch, Eric W, Chen, Jingchun, Moritz, Robert L, Aebersold, Ruedi
Publicado em 2011

Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics

Por Hüttenhain, Ruth, Soste, Martin, Selevsek, Nathalie, Röst, Hannes, Sethi, Atul, Carapito, Christine, Farrah, Terry, Deutsch, Eric W., Kusebauch, Ulrike, Moritz, Robert L., Niméus-Malmström, Emma, Rinner, Oliver, Aebersold, Ruedi
Publicado em 2012

PASSEL: The PeptideAtlas SRM Experiment Library

Por Farrah, Terry, Deutsch, Eric W., Kreisberg, Richard, Sun, Zhi, Campbell, David S., Mendoza, Luis, Kusebauch, Ulrike, Brusniak, Mi-Youn, Hüttenhain, Ruth, Schiess, Ralph, Selevsek, Nathalie, Aebersold, Ruedi, Moritz, Robert L.
Publicado em 2012

N-Glycoprotein SRMAtlas: A RESOURCE OF MASS SPECTROMETRIC ASSAYS FOR N-GLYCOSITES ENABLING CONSISTENT AND MULTIPLEXED PROTEIN QUANTIFICATION FOR CLINICAL APPLICATIONS

Por Hüttenhain, Ruth, Surinova, Silvia, Ossola, Reto, Sun, Zhi, Campbell, David, Cerciello, Ferdinando, Schiess, Ralph, Bausch-Fluck, Damaris, Rosenberger, George, Chen, Jingchung, Rinner, Oliver, Kusebauch, Ulrike, Hajdúch, Marián, Moritz, Robert L., Wollscheid, Bernd, Aebersold, Ruedi
Publicado em 2013

Comparative proteome analysis reveals conserved and specific adaptation patterns of Staphylococcus aureus after internalization by different types of human non-professional phagocy...

Por Surmann, Kristin, Michalik, Stephan, Hildebrandt, Petra, Gierok, Philipp, Depke, Maren, Brinkmann, Lars, Bernhardt, Jörg, Salazar, Manuela G., Sun, Zhi, Shteynberg, David, Kusebauch, Ulrike, Moritz, Robert L., Wollscheid, Bernd, Lalk, Michael, Völker, Uwe, Schmidt, Frank
Publicado em 2014

Correction: The Microvesicle Component of HIV-1 Inocula Modulates Dendritic Cell Infection and Maturation and Enhances Adhesion to and Activation of T Lymphocytes

Por Mercier, Sarah K., Donaghy, Heather, Botting, Rachel A., Turville, Stuart G., Harman, Andrew N., Nasr, Najla, Ji, Hong, Kusebauch, Ulrike, Mendoza, Luis, Shteynberg, David, Sandgren, Kerrie, Simpson, Richard J., Moritz, Robert L., Cunningham, Anthony L.
Publicado em 2013

The Microvesicle Component of HIV-1 Inocula Modulates Dendritic Cell Infection and Maturation and Enhances Adhesion to and Activation of T Lymphocytes

Por Mercier, Sarah K., Donaghy, Heather, Botting, Rachel A., Turville, Stuart G., Harman, Andrew N., Nasr, Najla, Ji, Hong, Kusebauch, Ulrike, Mendoza, Luis, Shteynberg, David, Sandgren, Kerrie, Simpson, Richard J., Moritz, Robert L., Cunningham, Anthony L.
Publicado em 2013

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1

Por Deutsch, Eric W., Overall, Christopher M., Van Eyk, Jennifer E., Baker, Mark S., Paik, Young-Ki, Weintraub, Susan T., Lane, Lydie, Martens, Lennart, Vandenbrouck, Yves, Kusebauch, Ulrike, Hancock, William S., Hermjakob, Henning, Aebersold, Ruedi, Moritz, Robert L., Omenn, Gilbert S.
Publicado no J Proteome Res (2016)

RNA Sequencing Identifies Novel Translational Biomarkers of Kidney Fibrosis

Por Craciun, Florin L., Bijol, Vanesa, Ajay, Amrendra K., Rao, Poornima, Kumar, Ramya K., Hutchinson, John, Hofmann, Oliver, Joshi, Nikita, Luyendyk, James P., Kusebauch, Ulrike, Moss, Christopher L., Srivastava, Anand, Himmelfarb, Jonathan, Waikar, Sushrut S., Moritz, Robert L., Vaidya, Vishal S.
Publicado no J Am Soc Nephrol (2016)

Oncogenic H-Ras Reprograms Madin-Darby Canine Kidney (MDCK) Cell-derived Exosomal Proteins Following Epithelial-Mesenchymal Transition

Por Tauro, Bow J., Mathias, Rommel A., Greening, David W., Gopal, Shashi K., Ji, Hong, Kapp, Eugene A., Coleman, Bradley M., Hill, Andrew F., Kusebauch, Ulrike, Hallows, Janice L., Shteynberg, David, Moritz, Robert L., Zhu, Hong-Jian, Simpson, Richard J.
Publicado em 2013

A complete mass spectrometric map for the analysis of the yeast proteome and its application to quantitative trait analysis

Por Picotti, Paola, Clement-Ziza, Mathieu, Lam, Henry, Campbell, David S., Schmidt, Alexander, Deutsch, Eric W., Röst, Hannes, Sun, Zhi, Rinner, Oliver, Reiter, Lukas, Shen, Qin, Michaelson, Jacob J., Frei, Andreas, Alberti, Simon, Kusebauch, Ulrike, Wollscheid, Bernd, Moritz, Robert, Beyer, Andreas, Aebersold, Ruedi
Publicado em 2013