Comparing protein structures with RINspector automation in Cytoscape

Por Brysbaert, Guillaume, Mauri, Théo, Lensink, Marc F.
Publicado no F1000Res (2018)

Identification of Specific Lipid-binding Sites in Integral Membrane Proteins

Por Lensink, Marc F., Govaerts, Cédric, Ruysschaert, Jean-Marie
Publicado em 2010

Structures of C-mannosylated anti-adhesives bound to the type 1 fimbrial FimH adhesin

Por de Ruyck, Jerome, Lensink, Marc F., Bouckaert, Julie
Publicado no IUCrJ (2016)

Relating destabilizing regions to known functional sites in proteins

Por Dessailly, Benoît H, Lensink, Marc F, Wodak, Shoshana J
Publicado em 2007

On the ability of molecular dynamics simulation and continuum electrostatics to treat interfacial water molecules in protein-protein complexes

Por Copie, Guillaume, Cleri, Fabrizio, Blossey, Ralf, Lensink, Marc F.
Publicado no Sci Rep (2016)

CLUB-MARTINI: Selecting Favourable Interactions amongst Available Candidates, a Coarse-Grained Simulation Approach to Scoring Docking Decoys

Por Hou, Qingzhen, Lensink, Marc F., Heringa, Jaap, Feenstra, K. Anton
Publicado no PLoS One (2016)

Molecular docking as a popular tool in drug design, an in silico travel

Por de Ruyck, Jerome, Brysbaert, Guillaume, Blossey, Ralf, Lensink, Marc F
Publicado no Adv Appl Bioinform Chem (2016)

RINspector: a Cytoscape app for centrality analyses and DynaMine flexibility prediction

Por Brysbaert, Guillaume, Lorgouilloux, Kevin, Vranken, Wim F, Lensink, Marc F
Publicado no Bioinformatics (2018)

LigASite—a database of biologically relevant binding sites in proteins with known apo-structures

Por Dessailly, Benoit H., Lensink, Marc F., Orengo, Christine A., Wodak, Shoshana J.
Publicado em 2008

On the Molecular Basis of D-Bifunctional Protein Deficiency Type III

Por Mehtälä, Maija L., Lensink, Marc F., Pietikäinen, Laura P., Hiltunen, J. Kalervo, Glumoff, Tuomo
Publicado em 2013

Probing the Conformation of FhaC with Small-Angle Neutron Scattering and Molecular Modeling

Por Gabel, Frank, Lensink, Marc F., Clantin, Bernard, Jacob-Dubuisson, Françoise, Villeret, Vincent, Ebel, Christine
Publicado em 2014

Coiled-Coil Antagonism Regulates Activity of Venus Flytrap-Domain-Containing Sensor Kinases of the BvgS Family

Por Lesne, Elodie, Dupré, Elian, Lensink, Marc F., Locht, Camille, Antoine, Rudy, Jacob-Dubuisson, Françoise
Publicado no mBio (2018)

Introducing a Clustering Step in a Consensus Approach for the Scoring of Protein-Protein Docking Models

Por Chermak, Edrisse, De Donato, Renato, Lensink, Marc F., Petta, Andrea, Serra, Luigi, Scarano, Vittorio, Cavallo, Luigi, Oliva, Romina
Publicado no PLoS One (2016)

Virulence Regulation with Venus Flytrap Domains: Structure and Function of the Periplasmic Moiety of the Sensor-Kinase BvgS

Por Dupré, Elian, Herrou, Julien, Lensink, Marc F., Wintjens, René, Vagin, Alexey, Lebedev, Andrey, Crosson, Sean, Villeret, Vincent, Locht, Camille, Antoine, Rudy, Jacob-Dubuisson, Françoise
Publicado no PLoS Pathog (2015)

Signal Transduction by BvgS Sensor Kinase: BINDING OF MODULATOR NICOTINATE AFFECTS THE CONFORMATION AND DYNAMICS OF THE ENTIRE PERIPLASMIC MOIETY

Por Dupré, Elian, Lesne, Elodie, Guérin, Jérémy, Lensink, Marc F., Verger, Alexis, de Ruyck, Jérôme, Brysbaert, Guillaume, Vezin, Hervé, Locht, Camille, Antoine, Rudy, Jacob-Dubuisson, Françoise
Publicado no J Biol Chem (2015)

Signal transduction by BvgS sensor kinase. BINDING OF MODULATOR NICOTINATE AFFECTS THE CONFORMATION AND DYNAMICS OF THE ENTIRE PERIPLASMIC MOIETY.

Por Dupré, Elian, Lesne, Elodie, Guérin, Jérémy, Lensink, Marc F., Verger, Alexis, de Ruyck, Jérôme, Brysbaert, Guillaume, Vezin, Hervé, Locht, Camille, Antoine, Rudy, Jacob-Dubuisson, Françoise
Publicado no J Biol Chem (2015)

Structure and dynamics of a human myelin protein P2 portal region mutant indicate opening of the β barrel in fatty acid binding proteins

Por Laulumaa, Saara, Nieminen, Tuomo, Raasakka, Arne, Krokengen, Oda C., Safaryan, Anushik, Hallin, Erik I., Brysbaert, Guillaume, Lensink, Marc F., Ruskamo, Salla, Vattulainen, Ilpo, Kursula, Petri
Publicado no BMC Struct Biol (2018)

Mutation of Tyr137 of the universal Escherichia coli fimbrial adhesin FimH relaxes the tyrosine gate prior to mannose binding

Por Rabbani, Said, Krammer, Eva-Maria, Roos, Goedele, Zalewski, Adam, Preston, Roland, Eid, Sameh, Zihlmann, Pascal, Prévost, Martine, Lensink, Marc F., Thompson, Andrew, Ernst, Beat, Bouckaert, Julie
Publicado no IUCrJ (2017)

Blind Prediction of Interfacial Water Positions in CAPRI

Por Lensink, Marc F., Moal, Iain H., Bates, Paul A., Kastritis, Panagiotis L., Melquiond, Adrien S.J., Karaca, Ezgi, Schmitz, Christophe, van Dijk, Marc, Bonvin, Alexandre M.J.J., Eisenstein, Miriam, Jiménez-García, Brian, Grosdidier, Solène, Solernou, Albert, Pérez-Cano, Laura, Pallara, Chiara, Fernández-Recio, Juan, Xu, Jianqing, Muthu, Pravin, Kilambi, Krishna Praneeth, Gray, Jeffrey J., Grudinin, Sergei, Derevyanko, Georgy, Mitchell, Julie C., Wieting, John, Kanamori, Eiji, Tsuchiya, Yuko, Murakami, Yoichi, Sarmiento, Joy, Standley, Daron M., Shirota, Matsuyuki, Kinoshita, Kengo, Nakamura, Haruki, Chavent, Matthieu, Ritchie, David W., Park, Hahnbeom, Ko, Junsu, Lee, Hasup, Seok, Chaok, Shen, Yang, Kozakov, Dima, Vajda, Sandor, Kundrotas, Petras J., Vakser, Ilya A., Pierce, Brian G., Hwang, Howook, Vreven, Thom, Weng, Zhiping, Buch, Idit, Farkash, Efrat, Wolfson, Haim J., Zacharias, Martin, Qin, Sanbo, Zhou, Huan-Xiang, Huang, Shen-You, Zou, Xiaoqin, Wojdyla, Justyna A., Kleanthous, Colin, Wodak, Shoshana J.
Publicado no Proteins (2013)

Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment

Por Lensink, Marc F., Velankar, Sameer, Kryshtafovych, Andriy, Huang, Shen‐You, Schneidman‐Duhovny, Dina, Sali, Andrej, Segura, Joan, Fernandez‐Fuentes, Narcis, Viswanath, Shruthi, Elber, Ron, Grudinin, Sergei, Popov, Petr, Neveu, Emilie, Lee, Hasup, Baek, Minkyung, Park, Sangwoo, Heo, Lim, Rie Lee, Gyu, Seok, Chaok, Qin, Sanbo, Zhou, Huan‐Xiang, Ritchie, David W., Maigret, Bernard, Devignes, Marie‐Dominique, Ghoorah, Anisah, Torchala, Mieczyslaw, Chaleil, Raphaël A.G., Bates, Paul A., Ben‐Zeev, Efrat, Eisenstein, Miriam, Negi, Surendra S., Weng, Zhiping, Vreven, Thom, Pierce, Brian G., Borrman, Tyler M., Yu, Jinchao, Ochsenbein, Françoise, Guerois, Raphaël, Vangone, Anna, Rodrigues, João P.G.L.M., van Zundert, Gydo, Nellen, Mehdi, Xue, Li, Karaca, Ezgi, Melquiond, Adrien S.J., Visscher, Koen, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Xu, Xianjin, Qiu, Liming, Yan, Chengfei, Li, Jilong, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Shen, Yang, Peterson, Lenna X., Kim, Hyung‐Rae, Roy, Amit, Han, Xusi, Esquivel‐Rodriguez, Juan, Kihara, Daisuke, Yu, Xiaofeng, Bruce, Neil J., Fuller, Jonathan C., Wade, Rebecca C., Anishchenko, Ivan, Kundrotas, Petras J., Vakser, Ilya A., Imai, Kenichiro, Yamada, Kazunori, Oda, Toshiyuki, Nakamura, Tsukasa, Tomii, Kentaro, Pallara, Chiara, Romero‐Durana, Miguel, Jiménez‐García, Brian, Moal, Iain H., Férnandez‐Recio, Juan, Joung, Jong Young, Kim, Jong Yun, Joo, Keehyoung, Lee, Jooyoung, Kozakov, Dima, Vajda, Sandor, Mottarella, Scott, Hall, David R., Beglov, Dmitri, Mamonov, Artem, Xia, Bing, Bohnuud, Tanggis, Del Carpio, Carlos A., Ichiishi, Eichiro, Marze, Nicholas, Kuroda, Daisuke, Roy Burman, Shourya S., Gray, Jeffrey J., Chermak, Edrisse, Cavallo, Luigi, Oliva, Romina, Tovchigrechko, Andrey, Wodak, Shoshana J.
Publicado no Proteins (2016)