Mut2Vec: distributed representation of cancerous mutations

par Kim, Sunkyu, Lee, Heewon, Kim, Keonwoo, Kang, Jaewoo
Publié dans BMC Med Genomics (2018)

Induction of ribosomal genes and hepatocyte hypertrophy by adenovirus-mediated expression of c-Myc in vivo

par Kim, Sunkyu, Li, Qing, Dang, Chi V., Lee, Linda A.
Publié 2000

In silico drug combination discovery for personalized cancer therapy

par Jeon, Minji, Kim, Sunkyu, Park, Sungjoon, Lee, Heewon, Kang, Jaewoo
Publié dans BMC Syst Biol (2018)

Improved survival analysis by learning shared genomic information from pan-cancer data

par Kim, Sunkyu, Kim, Keonwoo, Choe, Junseok, Lee, Inggeol, Kang, Jaewoo
Publié dans Bioinformatics (2020)

Predicting mechanism of action of novel compounds using compound structure and transcriptomic signature coembedding

par Jang, Gwanghoon, Park, Sungjoon, Lee, Sanghoon, Kim, Sunkyu, Park, Sejeong, Kang, Jaewoo
Publié dans Bioinformatics (2021)

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

par Lee, Jinhyuk, Yoon, Wonjin, Kim, Sungdong, Kim, Donghyeon, Kim, Sunkyu, So, Chan Ho, Kang, Jaewoo
Publié dans Bioinformatics (2020)

BRONCO: Biomedical entity Relation ONcology COrpus for extracting gene-variant-disease-drug relations

par Lee, Kyubum, Lee, Sunwon, Park, Sungjoon, Kim, Sunkyu, Kim, Suhkyung, Choi, Kwanghun, Tan, Aik Choon, Kang, Jaewoo
Publié dans Database (Oxford) (2016)

HiPub: translating PubMed and PMC texts to networks for knowledge discovery

par Lee, Kyubum, Shin, Wonho, Kim, Byounggun, Lee, Sunwon, Choi, Yonghwa, Kim, Sunkyu, Jeon, Minji, Tan, Aik Choon, Kang, Jaewoo
Publié dans Bioinformatics (2016)

Deep learning of mutation-gene-drug relations from the literature

par Lee, Kyubum, Kim, Byounggun, Choi, Yonghwa, Kim, Sunkyu, Shin, Wonho, Lee, Sunwon, Park, Sungjoon, Kim, Seongsoon, Tan, Aik Choon, Kang, Jaewoo
Publié dans BMC Bioinformatics (2018)

BEST: Next-Generation Biomedical Entity Search Tool for Knowledge Discovery from Biomedical Literature

par Lee, Sunwon, Kim, Donghyeon, Lee, Kyubum, Choi, Jaehoon, Kim, Seongsoon, Jeon, Minji, Lim, Sangrak, Choi, Donghee, Kim, Sunkyu, Tan, Aik-Choon, Kang, Jaewoo
Publié dans PLoS One (2016)

ChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome and literature data mining

par Lee, Myunggyo, Lee, Kyubum, Yu, Namhee, Jang, Insu, Choi, Ikjung, Kim, Pora, Jang, Ye Eun, Kim, Byounggun, Kim, Sunkyu, Lee, Byungwook, Kang, Jaewoo, Lee, Sanghyuk
Publié dans Nucleic Acids Res (2017)

Functional, chemical genomic, and super-enhancer screening identify sensitivity to cyclin D1/CDK4 pathway inhibition in Ewing sarcoma

par Kennedy, Alyssa L., Vallurupalli, Mounica, Chen, Liying, Crompton, Brian, Cowley, Glenn, Vazquez, Francisca, Weir, Barbara A., Tsherniak, Aviad, Parasuraman, Sudha, Kim, Sunkyu, Alexe, Gabriela, Stegmaier, Kimberly
Publié dans Oncotarget (2015)

ChimerDB 4.0: an updated and expanded database of fusion genes

par Jang, Ye Eun, Jang, Insu, Kim, Sunkyu, Cho, Subin, Kim, Daehan, Kim, Keonwoo, Kim, Jaewon, Hwang, Jimin, Kim, Sangok, Kim, Jaesang, Kang, Jaewoo, Lee, Byungwook, Lee, Sanghyuk
Publié dans Nucleic Acids Res (2020)

Building a PubMed knowledge graph

par Xu, Jian, Kim, Sunkyu, Song, Min, Jeong, Minbyul, Kim, Donghyeon, Kang, Jaewoo, Rousseau, Justin F., Li, Xin, Xu, Weijia, Torvik, Vetle I., Bu, Yi, Chen, Chongyan, Ebeid, Islam Akef, Li, Daifeng, Ding, Ying
Publié dans Sci Data (2020)

Synergistic Drug Combinations with a CDK4/6 Inhibitor in T-cell Acute Lymphoblastic Leukemia

par Pikman, Yana, Alexe, Gabriela, Roti, Giovanni, Conway, Amy Saur, Furman, Andrew, Lee, Emily S., Place, Andrew E., Kim, Sunkyu, Saran, Chitra, Modiste, Rebecca, Weinstock, David M., Harris, Marian, Kung, Andrew L., Silverman, Lewis B., Stegmaier, Kimberly
Publié dans Clin Cancer Res (2016)

The potent and selective cyclin-dependent kinases 4 and 6 inhibitor ribociclib (LEE011) is a versatile combination partner in preclinical cancer models

par Kim, Sunkyu, Tiedt, Ralph, Loo, Alice, Horn, Thomas, Delach, Scott, Kovats, Steven, Haas, Kristy, Engstler, Barbara Schacher, Cao, Alexander, Pinzon-Ortiz, Maria, Mulford, Iain, Acker, Michael G., Chopra, Rajiv, Brain, Christopher, di Tomaso, Emmanuelle, Sellers, William R., Caponigro, Giordano
Publié dans Oncotarget (2018)

Correction: The potent and selective cyclin-dependent kinases 4 and 6 inhibitor ribociclib (LEE011) is a versatile combination partner in preclinical cancer models

par Kim, Sunkyu, Tiedt, Ralph, Loo, Alice, Horn, Thomas, Delach, Scott, Kovats, Steven, Haas, Kristy, Engstler, Barbara Schacher, Cao, Alexander, Pinzon-Ortiz, Maria, Mulford, Iain, Acker, Michael G., Chopra, Rajiv, Brain, Christopher, Tomaso, Emmanuelle di, Sellers, William R., Caponigro, Giordano
Publié dans Oncotarget (2020)

Dual CDK4/CDK6 Inhibition Induces Cell Cycle Arrest and Senescence in Neuroblastoma

par Rader, JulieAnn, Russell, Mike R., Hart, Lori S., Nakazawa, Michael S., Belcastro, Lili T., Martinez, Daniel, Li, Yimei, Carpenter, Erica L., Attiyeh, Edward F., Diskin, Sharon J., Kim, Sunkyu, Parasuraman, Sudha, Caponigro, Giordano, Schnepp, Robert W., Wood, Andrew C., Pawel, Bruce, Cole, Kristina A., Maris, John M.
Publié 2013

Dual ALK and CDK4/6 inhibition demonstrates synergy against neuroblastoma

par Wood, Andrew C., Krytska, Kateryna, Ryles, Hannah, Infarinato, Nicole, Sano, Renata, Hansel, Theodore, Hart, Lori, King, Frederick J., Smith, Timothy R., Ainscow, Edward, Grandinetti, Kathryn B., Tuntland, Tove, Kim, Sunkyu, Caponigro, Giordano, He, You Qun, Krupa, Shiva, Li, Nanxin, Harris, Jennifer L., Mossé, Yaël P.
Publié dans Clin Cancer Res (2016)

CDK 4/6 inhibitors sensitize PIK3CA Mutant Breast Cancer to PI3K inhibitors

par Vora, Sadhna R., Juric, Dejan, Kim, Nayoon, Mino-Kenudson, Mari, Huynh, Tiffany, Costa, Carlotta, Lockerman, Elizabeth L., Pollack, Sarah F., Liu, Manway, Li, Xiaoyan, Lehar, Joseph, Wiesmann, Marion, Wartmann, Markus, Chen, Yan, Cao, Z. Alexander, Pinzon-Ortiz, Maria, Kim, Sunkyu, Schlegel, Robert, Huang, Alan, Engelman, Jeffrey A.
Publié 2014