CopyDetective: Detection threshold–aware copy number variant calling in whole-exome sequencing data

por Sandmann, Sarah, Wöste, Marius, de Graaf, Aniek O, Burkhardt, Birgit, Jansen, Joop H, Dugas, Martin
Publicado en Gigascience (2020)

High expression of transcription factor 4 (TCF4) is an independent adverse prognostic factor in acute myeloid leukemia that could guide treatment decisions

por in ’t Hout, Florentien E.M., van der Reijden, Bert A., Monteferrario, Davide, Jansen, Joop H., Huls, Gerwin
Publicado en Haematologica (2014)

GLM-based optimization of NGS data analysis: A case study of Roche 454, Ion Torrent PGM and Illumina NextSeq sequencing data

por Sandmann, Sarah, de Graaf, Aniek O., van der Reijden, Bert A., Jansen, Joop H., Dugas, Martin
Publicado en PLoS One (2017)

Intraperitoneal infusion of ex vivo-cultured allogeneic NK cells in recurrent ovarian carcinoma patients (a phase I study)

por Hoogstad-van Evert, Janneke, Bekkers, Ruud, Ottevanger, Nelleke, Schaap, Nicolaas, Hobo, Willemijn, Jansen, Joop H., Massuger, Leon, Dolstra, Harry
Publicado en Medicine (Baltimore) (2019)

Paroxysmal nocturnal hemoglobinuria caused by CN-LOH of constitutional PIGB mutation and 70-kbp microdeletion on 15q

por Langemeijer, Saskia, Schaap, Charlotte, Preijers, Frank, Jansen, Joop H., Blijlevens, Nicole, Inoue, Norimitsu, Muus, Petra, Kinoshita, Taroh, Murakami, Yoshiko
Publicado en Blood Adv (2020)

Transcription factor 4 (TCF4) expression predicts clinical outcome in RUNX1 mutated and translocated acute myeloid leukemia

por in 't Hout, Florentien E. M., Gerritsen, Mylène, Bullinger, Lars, van der Reijden, Bert A., Huls, Gerwin, Vellenga, Edo, Jansen, Joop H.
Publicado en Haematologica (2020)

A Novel, Essential Control for Clonality Analysis with Human Androgen Receptor Gene Polymerase Chain Reaction

por van Dijk, Jeroen P., Heuver, Leonie H., van der Reijden, Bert A., Raymakers, Reinier A., de Witte, Theo, Jansen, Joop H.
Publicado 2002

Hematopoietic stem cells exhibit a specific ABC transporter gene expression profile clearly distinct from other stem cells

por Tang, Leilei, Bergevoet, Saskia M, Gilissen, Christian, de Witte, Theo, Jansen, Joop H, van der Reijden, Bert A, Raymakers, Reinier AP
Publicado 2010

Evaluating Variant Calling Tools for Non-Matched Next-Generation Sequencing Data

por Sandmann, Sarah, de Graaf, Aniek O., Karimi, Mohsen, van der Reijden, Bert A., Hellström-Lindberg, Eva, Jansen, Joop H., Dugas, Martin
Publicado en Sci Rep (2017)

MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

por Jansen, Bastiaan JH, Sama, Iziah E, Eleveld-Trancikova, Dagmar, van Hout-Kuijer, Maaike A, Jansen, Joop H, Huynen, Martijn A, Adema, Gosse J
Publicado 2011

Combined IL-15 and IL-12 drives the generation of CD34(+)-derived natural killer cells with superior maturation and alloreactivity potential following adoptive transfer

por Cany, Jeannette, van der Waart, Anniek B, Spanholtz, Jan, Tordoir, Marleen, Jansen, Joop H, van der Voort, Robbert, Schaap, Nicolaas M, Dolstra, Harry
Publicado en Oncoimmunology (2015)

Apoptosis-Related Gene Expression Profiling in Hematopoietic Cell Fractions of MDS Patients

por Langemeijer, Saskia MC, Mariani, Niccolo, Knops, Ruth, Gilissen, Christian, Woestenenk, Rob, de Witte, Theo, Huls, Gerwin, van der Reijden, Bert A, Jansen, Joop H
Publicado en PLoS One (2016)

Cell composition and expansion strategy can reduce the beneficial effect of AKT-inhibition on functionality of CD8(+) T cells

por Mousset, Charlotte M., Hobo, Willemijn, de Ligt, Aafke, Baardman, Sjoerd, Schaap, Nicolaas P. M., Jansen, Joop H., van der Waart, Anniek B., Dolstra, Harry
Publicado en Cancer Immunol Immunother (2020)

Umbilical cord blood CD34(+) progenitor-derived NK cells efficiently kill ovarian cancer spheroids and intraperitoneal tumors in NOD/SCID/IL2Rg(null) mice

por Hoogstad-van Evert, Janneke S., Cany, Jeannette, van den Brand, Dirk, Oudenampsen, Manon, Brock, Roland, Torensma, Ruurd, Bekkers, Ruud L., Jansen, Joop H., Massuger, Leon F., Dolstra, Harry
Publicado en Oncoimmunology (2017)

Expression of the BRCA1 complex member BRE predicts disease free survival in breast cancer

por Noordermeer, Sylvie M., Wennemers, Marloes, Bergevoet, Saskia M., van der Heijden, Adrian, Tönnissen, Evelyn, Sweep, Fred C. G. J., Jansen, Joop H., Span, Paul N., van der Reijden, Bert A.
Publicado 2012

Peritoneal NK cells are responsive to IL-15 and percentages are correlated with outcome in advanced ovarian cancer patients

por Hoogstad-van Evert, Janneke S., Maas, Ralph J., van der Meer, Jolien, Cany, Jeannette, van der Steen, Sophieke, Jansen, Joop H., Miller, Jeffrey S., Bekkers, Ruud, Hobo, Willemijn, Massuger, Leon, Dolstra, Harry
Publicado en Oncotarget (2018)

Transcriptional Repression of the Neurofibromatosis-1 Tumor Suppressor by the t(8;21) Fusion Protein

por Yang, Genyan, Khalaf, Waleed, van de Locht, Louis, Jansen, Joop H., Gao, Meihua, Thompson, Mary Ann, van der Reijden, Bert A., Gutmann, David H., Delwel, Ruud, Clapp, D. Wade, Hiebert, Scott W.
Publicado 2005

Prevalence, predictors, and outcomes of clonal hematopoiesis in individuals aged ≥80 years

por van Zeventer, Isabelle A., Salzbrunn, Jonas B., de Graaf, Aniek O., van der Reijden, Bert A., Boezen, H. Marike, Vonk, Judith M., van der Harst, Pim, Schuringa, Jan Jacob, Jansen, Joop H., Huls, Gerwin
Publicado en Blood Adv (2021)

Mapping epigenetic regulator gene mutations in cytogenetically normal pediatric acute myeloid leukemia

por Valerio, Daria G., Katsman-Kuipers, Jenny E., Jansen, Joop H., Verboon, Lonneke J., de Haas, Valerie, Stary, Jan, Baruchel, André, Zimmermann, Martin, Pieters, Rob, Reinhardt, Dirk, van den Heuvel-Eibrink, Marry M., Zwaan, C. Michel
Publicado 2014

appreci8: a pipeline for precise variant calling integrating 8 tools

por Sandmann, Sarah, Karimi, Mohsen, de Graaf, Aniek O, Rohde, Christian, Göllner, Stefanie, Varghese, Julian, Ernsting, Jan, Walldin, Gunilla, van der Reijden, Bert A, Müller-Tidow, Carsten, Malcovati, Luca, Hellström-Lindberg, Eva, Jansen, Joop H, Dugas, Martin
Publicado en Bioinformatics (2018)