Nucleoporins and Transcription: New Connections, New Questions

door Ikegami, Kohta, Lieb, Jason D.
Gepubliceerd in 2010

Integral nuclear pore proteins bind to Pol III genes and are required for Pol III transcript processing in C. elegans

door Ikegami, Kohta, Lieb, Jason D.
Gepubliceerd in 2013

Nuclear lamin phosphorylation: an emerging role in gene regulation and pathogenesis of laminopathies

door Liu, Sunny Yang, Ikegami, Kohta
Gepubliceerd in Nucleus (2020)

Transcription-independent TFIIIC-bound sites cluster near heterochromatin boundaries within lamina-associated domains in C. elegans

door Stutzman, Alexis V., Liang, April S., Beilinson, Vera, Ikegami, Kohta
Gepubliceerd in Epigenetics Chromatin (2020)

Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2

door Ikegami, Kohta, Egelhofer, Thea A, Strome, Susan, Lieb, Jason D
Gepubliceerd in 2010

TRA-1 ChIP-seq reveals regulators of sexual differentiation and multilevel feedback in nematode sex determination

door Berkseth, Matt, Ikegami, Kohta, Arur, Swathi, Lieb, Jason D., Zarkower, David
Gepubliceerd in 2013

Phosphorylated Lamin A/C in the nuclear interior binds active enhancers associated with abnormal transcription in progeria

door Ikegami, Kohta, Secchia, Stefano, Almakki, Omar, Lieb, Jason D., Moskowitz, Ivan P.
Gepubliceerd in Dev Cell (2020)

Promoter- and RNA polymerase II–dependent hsp-16 gene association with nuclear pores in Caenorhabditis elegans

door Rohner, Sabine, Kalck, Veronique, Wang, Xuefei, Ikegami, Kohta, Lieb, Jason D., Gasser, Susan M., Meister, Peter
Gepubliceerd in 2013

Genome-wide analysis links emerin to neuromuscular junction activity in Caenorhabditis elegans

door González-Aguilera, Cristina, Ikegami, Kohta, Ayuso, Cristina, de Luis, Alberto, Íñiguez, María, Cabello, Juan, Lieb, Jason D, Askjaer, Peter
Gepubliceerd in 2014

Reduced insulin/IGF-1 signaling restores germ cell immortality to Caenorhabditis elegans Piwi mutants

door Simon, Matt, Sarkies, Peter, Ikegami, Kohta, Doebley, Anna-Lisa, Goldstein, Leonard D., Mitchell, Jacinth, Sakaguchi, Aisa, Miska, Eric A., Ahmed, Shawn
Gepubliceerd in 2014

Caenorhabditis elegans RSD-2 and RSD-6 promote germ cell immortality by maintaining small interfering RNA populations

door Sakaguchi, Aisa, Sarkies, Peter, Simon, Matt, Doebley, Anna-Lisa, Goldstein, Leonard D., Hedges, Ashley, Ikegami, Kohta, Alvares, Stacy M., Yang, Liwei, LaRocque, Jeannine R., Hall, Julie, Miska, Eric A., Ahmed, Shawn
Gepubliceerd in 2014

Transcriptional Patterning of the Ventricular Cardiac Conduction System

door Burnicka-Turek, Ozanna, Broman, Michael T., Steimle, Jeffrey D., Boukens, Bastiaan J., Petrenko, Nataliya B., Ikegami, Kohta, Nadadur, Rangarajan D., Qiao, Yun, Arnolds, David E., Yang, Xinan H., Patel, Vickas V., Nobrega, Marcelo A., Efimov, Igor R., Moskowitz, Ivan P.
Gepubliceerd in Circ Res (2020)

Broad chromosomal domains of histone modification patterns in C. elegans

door Liu, Tao, Rechtsteiner, Andreas, Egelhofer, Thea A., Vielle, Anne, Latorre, Isabel, Cheung, Ming-Sin, Ercan, Sevinc, Ikegami, Kohta, Jensen, Morten, Kolasinska-Zwierz, Paulina, Rosenbaum, Heidi, Shin, Hyunjin, Taing, Scott, Takasaki, Teruaki, Iniguez, A. Leonardo, Desai, Arshad, Dernburg, Abby F., Kimura, Hiroshi, Lieb, Jason D., Ahringer, Julie, Strome, Susan, Liu, X. Shirley
Gepubliceerd in 2011

Evolutionarily conserved Tbx5–Wnt2/2b pathway orchestrates cardiopulmonary development

door Steimle, Jeffrey D., Rankin, Scott A., Slagle, Christopher E., Bekeny, Jenna, Rydeen, Ariel B., Chan, Sunny Sun-Kin, Kweon, Junghun, Yang, Xinan H., Ikegami, Kohta, Nadadur, Rangarajan D., Rowton, Megan, Hoffmann, Andrew D., Lazarevic, Sonja, Thomas, William, Boyle Anderson, Erin A. T., Horb, Marko E., Luna-Zurita, Luis, Ho, Robert K., Kyba, Michael, Jensen, Bjarke, Zorn, Aaron M., Conlon, Frank L., Moskowitz, Ivan P.
Gepubliceerd in Proc Natl Acad Sci U S A (2018)

Comparative analysis of metazoan chromatin organization

door Ho, Joshua W. K., Jung, Youngsook L., Liu, Tao, Alver, Burak H., Lee, Soohyun, Ikegami, Kohta, Sohn, Kyung-Ah, Minoda, Aki, Tolstorukov, Michael Y., Appert, Alex, Parker, Stephen C. J., Gu, Tingting, Kundaje, Anshul, Riddle, Nicole C., Bishop, Eric, Egelhofer, Thea A., Hu, Sheng’en Shawn, Alekseyenko, Artyom A., Rechtsteiner, Andreas, Asker, Dalal, Belsky, Jason A., Bowman, Sarah K., Chen, Q. Brent, Chen, Ron A-J, Day, Daniel S., Dong, Yan, Dose, Andrea C., Duan, Xikun, Epstein, Charles B., Ercan, Sevinc, Feingold, Elise A., Ferrari, Francesco, Garrigues, Jacob M., Gehlenborg, Nils, Good, Peter J., Haseley, Psalm, He, Daniel, Herrmann, Moritz, Hoffman, Michael M., Jeffers, Tess E., Kharchenko, Peter V., Kolasinska-Zwierz, Paulina, Kotwaliwale, Chitra V., Kumar, Nischay, Langley, Sasha A., Larschan, Erica N., Latorre, Isabel, Libbrecht, Maxwell W., Lin, Xueqiu, Park, Richard, Pazin, Michael J., Pham, Hoang N., Plachetka, Annette, Qin, Bo, Schwartz, Yuri B., Shoresh, Noam, Stempor, Przemyslaw, Vielle, Anne, Wang, Chengyang, Whittle, Christina M., Xue, Huiling, Kingston, Robert E., Kim, Ju Han, Bernstein, Bradley E., Dernburg, Abby F., Pirrotta, Vincenzo, Kuroda, Mitzi I., Noble, William S., Tullius, Thomas D., Kellis, Manolis, MacAlpine, David M., Strome, Susan, Elgin, Sarah C. R., Liu, Xiaole Shirley, Lieb, Jason D., Ahringer, Julie, Karpen, Gary H., Park, Peter J.
Gepubliceerd in Nature (2014)

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project

door Gerstein, Mark B., Lu, Zhi John, Van Nostrand, Eric L., Cheng, Chao, Arshinoff, Bradley I., Liu, Tao, Yip, Kevin Y., Robilotto, Rebecca, Rechtsteiner, Andreas, Ikegami, Kohta, Alves, Pedro, Chateigner, Aurelien, Perry, Marc, Morris, Mitzi, Auerbach, Raymond K., Feng, Xin, Leng, Jing, Vielle, Anne, Niu, Wei, Rhrissorrakrai, Kahn, Agarwal, Ashish, Alexander, Roger P., Barber, Galt, Brdlik, Cathleen M., Brennan, Jennifer, Brouillet, Jeremy Jean, Carr, Adrian, Cheung, Ming-Sin, Clawson, Hiram, Contrino, Sergio, Dannenberg, Luke O., Dernburg, Abby F., Desai, Arshad, Dick, Lindsay, Dosé, Andréa C., Du, Jiang, Egelhofer, Thea, Ercan, Sevinc, Euskirchen, Ghia, Ewing, Brent, Feingold, Elise A., Gassmann, Reto, Good, Peter J., Green, Phil, Gullier, Francois, Gutwein, Michelle, Guyer, Mark S., Habegger, Lukas, Han, Ting, Henikoff, Jorja G., Henz, Stefan R., Hinrichs, Angie, Holster, Heather, Hyman, Tony, Iniguez, A. Leo, Janette, Judith, Jensen, Morten, Kato, Masaomi, Kent, W. James, Kephart, Ellen, Khivansara, Vishal, Khurana, Ekta, Kim, John K., Kolasinska-Zwierz, Paulina, Lai, Eric C., Latorre, Isabel, Leahey, Amber, Lewis, Suzanna, Lloyd, Paul, Lochovsky, Lucas, Lowdon, Rebecca F., Lubling, Yaniv, Lyne, Rachel, MacCoss, Michael, Mackowiak, Sebastian D., Mangone, Marco, McKay, Sheldon, Mecenas, Desirea, Merrihew, Gennifer, Miller, David M., Muroyama, Andrew, Murray, John I., Ooi, Siew-Loon, Pham, Hoang, Phippen, Taryn, Preston, Elicia A., Rajewsky, Nikolaus, Rätsch, Gunnar, Rosenbaum, Heidi, Rozowsky, Joel, Rutherford, Kim, Ruzanov, Peter, Sarov, Mihail, Sasidharan, Rajkumar, Sboner, Andrea, Scheid, Paul, Segal, Eran, Shin, Hyunjin, Shou, Chong, Slack, Frank J., Slightam, Cindie, Smith, Richard, Spencer, William C., Stinson, E. O., Taing, Scott, Takasaki, Teruaki, Vafeados, Dionne, Voronina, Ksenia, Wang, Guilin, Washington, Nicole L., Whittle, Christina M., Wu, Beijing, Yan, Koon-Kiu, Zeller, Georg, Zha, Zheng, Zhong, Mei, Zhou, Xingliang, Ahringer, Julie, Strome, Susan, Gunsalus, Kristin C., Micklem, Gos, Liu, X. Shirley, Reinke, Valerie, Kim, Stuart K., Hillier, LaDeana W., Henikoff, Steven, Piano, Fabio, Snyder, Michael, Stein, Lincoln, Lieb, Jason D., Waterston, Robert H.
Gepubliceerd in 2010