Nucleoporins and Transcription: New Connections, New Questions

por Ikegami, Kohta, Lieb, Jason D.
Publicado 2010

Integral nuclear pore proteins bind to Pol III genes and are required for Pol III transcript processing in C. elegans

por Ikegami, Kohta, Lieb, Jason D.
Publicado 2013

Nuclear lamin phosphorylation: an emerging role in gene regulation and pathogenesis of laminopathies

por Liu, Sunny Yang, Ikegami, Kohta
Publicado en Nucleus (2020)

Transcription-independent TFIIIC-bound sites cluster near heterochromatin boundaries within lamina-associated domains in C. elegans

por Stutzman, Alexis V., Liang, April S., Beilinson, Vera, Ikegami, Kohta
Publicado en Epigenetics Chromatin (2020)

Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2

por Ikegami, Kohta, Egelhofer, Thea A, Strome, Susan, Lieb, Jason D
Publicado 2010

TRA-1 ChIP-seq reveals regulators of sexual differentiation and multilevel feedback in nematode sex determination

por Berkseth, Matt, Ikegami, Kohta, Arur, Swathi, Lieb, Jason D., Zarkower, David
Publicado 2013

Phosphorylated Lamin A/C in the nuclear interior binds active enhancers associated with abnormal transcription in progeria

por Ikegami, Kohta, Secchia, Stefano, Almakki, Omar, Lieb, Jason D., Moskowitz, Ivan P.
Publicado en Dev Cell (2020)

Promoter- and RNA polymerase II–dependent hsp-16 gene association with nuclear pores in Caenorhabditis elegans

por Rohner, Sabine, Kalck, Veronique, Wang, Xuefei, Ikegami, Kohta, Lieb, Jason D., Gasser, Susan M., Meister, Peter
Publicado 2013

Genome-wide analysis links emerin to neuromuscular junction activity in Caenorhabditis elegans

por González-Aguilera, Cristina, Ikegami, Kohta, Ayuso, Cristina, de Luis, Alberto, Íñiguez, María, Cabello, Juan, Lieb, Jason D, Askjaer, Peter
Publicado 2014

Reduced insulin/IGF-1 signaling restores germ cell immortality to Caenorhabditis elegans Piwi mutants

por Simon, Matt, Sarkies, Peter, Ikegami, Kohta, Doebley, Anna-Lisa, Goldstein, Leonard D., Mitchell, Jacinth, Sakaguchi, Aisa, Miska, Eric A., Ahmed, Shawn
Publicado 2014

Caenorhabditis elegans RSD-2 and RSD-6 promote germ cell immortality by maintaining small interfering RNA populations

por Sakaguchi, Aisa, Sarkies, Peter, Simon, Matt, Doebley, Anna-Lisa, Goldstein, Leonard D., Hedges, Ashley, Ikegami, Kohta, Alvares, Stacy M., Yang, Liwei, LaRocque, Jeannine R., Hall, Julie, Miska, Eric A., Ahmed, Shawn
Publicado 2014

Transcriptional Patterning of the Ventricular Cardiac Conduction System

por Burnicka-Turek, Ozanna, Broman, Michael T., Steimle, Jeffrey D., Boukens, Bastiaan J., Petrenko, Nataliya B., Ikegami, Kohta, Nadadur, Rangarajan D., Qiao, Yun, Arnolds, David E., Yang, Xinan H., Patel, Vickas V., Nobrega, Marcelo A., Efimov, Igor R., Moskowitz, Ivan P.
Publicado en Circ Res (2020)

Broad chromosomal domains of histone modification patterns in C. elegans

por Liu, Tao, Rechtsteiner, Andreas, Egelhofer, Thea A., Vielle, Anne, Latorre, Isabel, Cheung, Ming-Sin, Ercan, Sevinc, Ikegami, Kohta, Jensen, Morten, Kolasinska-Zwierz, Paulina, Rosenbaum, Heidi, Shin, Hyunjin, Taing, Scott, Takasaki, Teruaki, Iniguez, A. Leonardo, Desai, Arshad, Dernburg, Abby F., Kimura, Hiroshi, Lieb, Jason D., Ahringer, Julie, Strome, Susan, Liu, X. Shirley
Publicado 2011

Evolutionarily conserved Tbx5–Wnt2/2b pathway orchestrates cardiopulmonary development

por Steimle, Jeffrey D., Rankin, Scott A., Slagle, Christopher E., Bekeny, Jenna, Rydeen, Ariel B., Chan, Sunny Sun-Kin, Kweon, Junghun, Yang, Xinan H., Ikegami, Kohta, Nadadur, Rangarajan D., Rowton, Megan, Hoffmann, Andrew D., Lazarevic, Sonja, Thomas, William, Boyle Anderson, Erin A. T., Horb, Marko E., Luna-Zurita, Luis, Ho, Robert K., Kyba, Michael, Jensen, Bjarke, Zorn, Aaron M., Conlon, Frank L., Moskowitz, Ivan P.
Publicado en Proc Natl Acad Sci U S A (2018)

Comparative analysis of metazoan chromatin organization

por Ho, Joshua W. K., Jung, Youngsook L., Liu, Tao, Alver, Burak H., Lee, Soohyun, Ikegami, Kohta, Sohn, Kyung-Ah, Minoda, Aki, Tolstorukov, Michael Y., Appert, Alex, Parker, Stephen C. J., Gu, Tingting, Kundaje, Anshul, Riddle, Nicole C., Bishop, Eric, Egelhofer, Thea A., Hu, Sheng’en Shawn, Alekseyenko, Artyom A., Rechtsteiner, Andreas, Asker, Dalal, Belsky, Jason A., Bowman, Sarah K., Chen, Q. Brent, Chen, Ron A-J, Day, Daniel S., Dong, Yan, Dose, Andrea C., Duan, Xikun, Epstein, Charles B., Ercan, Sevinc, Feingold, Elise A., Ferrari, Francesco, Garrigues, Jacob M., Gehlenborg, Nils, Good, Peter J., Haseley, Psalm, He, Daniel, Herrmann, Moritz, Hoffman, Michael M., Jeffers, Tess E., Kharchenko, Peter V., Kolasinska-Zwierz, Paulina, Kotwaliwale, Chitra V., Kumar, Nischay, Langley, Sasha A., Larschan, Erica N., Latorre, Isabel, Libbrecht, Maxwell W., Lin, Xueqiu, Park, Richard, Pazin, Michael J., Pham, Hoang N., Plachetka, Annette, Qin, Bo, Schwartz, Yuri B., Shoresh, Noam, Stempor, Przemyslaw, Vielle, Anne, Wang, Chengyang, Whittle, Christina M., Xue, Huiling, Kingston, Robert E., Kim, Ju Han, Bernstein, Bradley E., Dernburg, Abby F., Pirrotta, Vincenzo, Kuroda, Mitzi I., Noble, William S., Tullius, Thomas D., Kellis, Manolis, MacAlpine, David M., Strome, Susan, Elgin, Sarah C. R., Liu, Xiaole Shirley, Lieb, Jason D., Ahringer, Julie, Karpen, Gary H., Park, Peter J.
Publicado en Nature (2014)

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project

por Gerstein, Mark B., Lu, Zhi John, Van Nostrand, Eric L., Cheng, Chao, Arshinoff, Bradley I., Liu, Tao, Yip, Kevin Y., Robilotto, Rebecca, Rechtsteiner, Andreas, Ikegami, Kohta, Alves, Pedro, Chateigner, Aurelien, Perry, Marc, Morris, Mitzi, Auerbach, Raymond K., Feng, Xin, Leng, Jing, Vielle, Anne, Niu, Wei, Rhrissorrakrai, Kahn, Agarwal, Ashish, Alexander, Roger P., Barber, Galt, Brdlik, Cathleen M., Brennan, Jennifer, Brouillet, Jeremy Jean, Carr, Adrian, Cheung, Ming-Sin, Clawson, Hiram, Contrino, Sergio, Dannenberg, Luke O., Dernburg, Abby F., Desai, Arshad, Dick, Lindsay, Dosé, Andréa C., Du, Jiang, Egelhofer, Thea, Ercan, Sevinc, Euskirchen, Ghia, Ewing, Brent, Feingold, Elise A., Gassmann, Reto, Good, Peter J., Green, Phil, Gullier, Francois, Gutwein, Michelle, Guyer, Mark S., Habegger, Lukas, Han, Ting, Henikoff, Jorja G., Henz, Stefan R., Hinrichs, Angie, Holster, Heather, Hyman, Tony, Iniguez, A. Leo, Janette, Judith, Jensen, Morten, Kato, Masaomi, Kent, W. James, Kephart, Ellen, Khivansara, Vishal, Khurana, Ekta, Kim, John K., Kolasinska-Zwierz, Paulina, Lai, Eric C., Latorre, Isabel, Leahey, Amber, Lewis, Suzanna, Lloyd, Paul, Lochovsky, Lucas, Lowdon, Rebecca F., Lubling, Yaniv, Lyne, Rachel, MacCoss, Michael, Mackowiak, Sebastian D., Mangone, Marco, McKay, Sheldon, Mecenas, Desirea, Merrihew, Gennifer, Miller, David M., Muroyama, Andrew, Murray, John I., Ooi, Siew-Loon, Pham, Hoang, Phippen, Taryn, Preston, Elicia A., Rajewsky, Nikolaus, Rätsch, Gunnar, Rosenbaum, Heidi, Rozowsky, Joel, Rutherford, Kim, Ruzanov, Peter, Sarov, Mihail, Sasidharan, Rajkumar, Sboner, Andrea, Scheid, Paul, Segal, Eran, Shin, Hyunjin, Shou, Chong, Slack, Frank J., Slightam, Cindie, Smith, Richard, Spencer, William C., Stinson, E. O., Taing, Scott, Takasaki, Teruaki, Vafeados, Dionne, Voronina, Ksenia, Wang, Guilin, Washington, Nicole L., Whittle, Christina M., Wu, Beijing, Yan, Koon-Kiu, Zeller, Georg, Zha, Zheng, Zhong, Mei, Zhou, Xingliang, Ahringer, Julie, Strome, Susan, Gunsalus, Kristin C., Micklem, Gos, Liu, X. Shirley, Reinke, Valerie, Kim, Stuart K., Hillier, LaDeana W., Henikoff, Steven, Piano, Fabio, Snyder, Michael, Stein, Lincoln, Lieb, Jason D., Waterston, Robert H.
Publicado 2010