Vivaldi: Visualization and validation of biomacromolecular NMR structures from the PDB

le Hendrickx, Pieter M S, Gutmanas, Aleksandras, Kleywegt, Gerard J
Foilsithe 2013

The role of structural bioinformatics resources in the era of integrative structural biology

le Gutmanas, Aleksandras, Oldfield, Thomas J., Patwardhan, Ardan, Sen, Sanchayita, Velankar, Sameer, Kleywegt, Gerard J.
Foilsithe 2013

A novel strategy for NMR resonance assignment and protein structure determination

le Lemak, Alexander, Gutmanas, Aleksandras, Chitayat, Seth, Karra, Murthy, Farès, Christophe, Sunnerhagen, Maria, Arrowsmith, Cheryl H.
Foilsithe 2010

SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins

le Dana, Jose M, Gutmanas, Aleksandras, Tyagi, Nidhi, Qi, Guoying, O’Donovan, Claire, Martin, Maria, Velankar, Sameer
Foilsithe in Nucleic Acids Res (2019)

Structural characterization of a flexible two-domain protein in solution using Small Angle X-ray Scattering and NMR spectroscopy

le Lemak, Alexander, Wu, Bin, Yee, Adelinda, Houliston, Scott, Lee, Hsiau-Wei, Gutmanas, Aleksandras, Fang, Xianyang, Garcia, Maite, Semesi, Anthony, Wang, Yun-Xing, Prestegard, James H., Arrowsmith, Cheryl H.
Foilsithe in Structure (2014)

Straightforward and complete deposition of NMR data to the PDBe

le Penkett, Christopher J., van Ginkel, Glen, Velankar, Sameer, Swaminathan, Jawahar, Ulrich, Eldon L., Mading, Steve, Stevens, Tim J., Fogh, Rasmus H., Gutmanas, Aleksandras, Kleywegt, Gerard J., Henrick, Kim, Vranken, Wim F.
Foilsithe 2010

PDBe: towards reusable data delivery infrastructure at protein data bank in Europe

le Mir, Saqib, Alhroub, Younes, Anyango, Stephen, Armstrong, David R, Berrisford, John M, Clark, Alice R, Conroy, Matthew J, Dana, Jose M, Deshpande, Mandar, Gupta, Deepti, Gutmanas, Aleksandras, Haslam, Pauline, Mak, Lora, Mukhopadhyay, Abhik, Nadzirin, Nurul, Paysan-Lafosse, Typhaine, Sehnal, David, Sen, Sanchayita, Smart, Oliver S, Varadi, Mihaly, Kleywegt, Gerard J, Velankar, Sameer
Foilsithe in Nucleic Acids Res (2018)

NMR Exchange Format: a unified and open standard for representation of NMR restraint data

le Gutmanas, Aleksandras, Adams, Paul D, Bardiaux, Benjamin, Berman, Helen M, Case, David A, Fogh, Rasmus H, Güntert, Peter, Hendrickx, Pieter M S, Herrmann, Torsten, Kleywegt, Gerard J, Kobayashi, Naohiro, Lange, Oliver F, Markley, John L, Montelione, Gaetano T, Nilges, Michael, Ragan, Timothy J, Schwieters, Charles D, Tejero, Roberto, Ulrich, Eldon L, Velankar, Sameer, Vranken, Wim F, Wedell, Jonathan R, Westbrook, John, Wishart, David S, Vuister, Geerten W
Foilsithe in Nat Struct Mol Biol (2015)

PDBe: Protein Data Bank in Europe

le Gutmanas, Aleksandras, Alhroub, Younes, Battle, Gary M., Berrisford, John M., Bochet, Estelle, Conroy, Matthew J., Dana, Jose M., Fernandez Montecelo, Manuel A., van Ginkel, Glen, Gore, Swanand P., Haslam, Pauline, Hatherley, Rowan, Hendrickx, Pieter M.S., Hirshberg, Miriam, Lagerstedt, Ingvar, Mir, Saqib, Mukhopadhyay, Abhik, Oldfield, Thomas J., Patwardhan, Ardan, Rinaldi, Luana, Sahni, Gaurav, Sanz-García, Eduardo, Sen, Sanchayita, Slowley, Robert A., Velankar, Sameer, Wainwright, Michael E., Kleywegt, Gerard J.
Foilsithe 2014

PDBe: improved findability of macromolecular structure data in the PDB

le Armstrong, David R, Berrisford, John M, Conroy, Matthew J, Gutmanas, Aleksandras, Anyango, Stephen, Choudhary, Preeti, Clark, Alice R, Dana, Jose M, Deshpande, Mandar, Dunlop, Roisin, Gane, Paul, Gáborová, Romana, Gupta, Deepti, Haslam, Pauline, Koča, Jaroslav, Mak, Lora, Mir, Saqib, Mukhopadhyay, Abhik, Nadzirin, Nurul, Nair, Sreenath, Paysan-Lafosse, Typhaine, Pravda, Lukas, Sehnal, David, Salih, Osman, Smart, Oliver, Tolchard, James, Varadi, Mihaly, Svobodova-Vařeková, Radka, Zaki, Hossam, Kleywegt, Gerard J, Velankar, Sameer
Foilsithe in Nucleic Acids Res (2020)

PDBe: Protein Data Bank in Europe

le Velankar, Sameer, Alhroub, Younes, Alili, Anaëlle, Best, Christoph, Boutselakis, Harry C., Caboche, Ségolène, Conroy, Matthew J., Dana, Jose M., van Ginkel, Glen, Golovin, Adel, Gore, Swanand P., Gutmanas, Aleksandras, Haslam, Pauline, Hirshberg, Miriam, John, Melford, Lagerstedt, Ingvar, Mir, Saqib, Newman, Laurence E., Oldfield, Tom J., Penkett, Chris J., Pineda-Castillo, Jorge, Rinaldi, Luana, Sahni, Gaurav, Sawka, Grégoire, Sen, Sanchayita, Slowley, Robert, Sousa da Silva, Alan Wilter, Suarez-Uruena, Antonio, Swaminathan, G. Jawahar, Symmons, Martyn F., Vranken, Wim F., Wainwright, Michael, Kleywegt, Gerard J.
Foilsithe 2011

Validation of Structures in the Protein Data Bank

le Gore, Swanand, Sanz García, Eduardo, Hendrickx, Pieter M.S., Gutmanas, Aleksandras, Westbrook, John D., Yang, Huanwang, Feng, Zukang, Baskaran, Kumaran, Berrisford, John M., Hudson, Brian P., Ikegawa, Yasuyo, Kobayashi, Naohiro, Lawson, Catherine L., Mading, Steve, Mak, Lora, Mukhopadhyay, Abhik, Oldfield, Thomas J., Patwardhan, Ardan, Peisach, Ezra, Sahni, Gaurav, Sekharan, Monica R., Sen, Sanchayita, Shao, Chenghua, Smart, Oliver S., Ulrich, Eldon L., Yamashita, Reiko, Quesada, Martha, Young, Jasmine Y., Nakamura, Haruki, Markley, John L., Berman, Helen M., Burley, Stephen K., Velankar, Sameer, Kleywegt, Gerard J.
Foilsithe in Structure (2017)

Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB)

le Adams, Paul D., Afonine, Pavel V., Baskaran, Kumaran, Berman, Helen M., Berrisford, John, Bricogne, Gerard, Brown, David G., Burley, Stephen K., Chen, Minyu, Feng, Zukang, Flensburg, Claus, Gutmanas, Aleksandras, Hoch, Jeffrey C., Ikegawa, Yasuyo, Kengaku, Yumiko, Krissinel, Eugene, Kurisu, Genji, Liang, Yuhe, Liebschner, Dorothee, Mak, Lora, Markley, John L., Moriarty, Nigel W., Murshudov, Garib N., Noble, Martin, Peisach, Ezra, Persikova, Irina, Poon, Billy K., Sobolev, Oleg V., Ulrich, Eldon L., Velankar, Sameer, Vonrhein, Clemens, Westbrook, John, Wojdyr, Marcin, Yokochi, Masashi, Young, Jasmine Y.
Foilsithe in Acta Crystallogr D Struct Biol (2019)

PDBe: improved accessibility of macromolecular structure data from PDB and EMDB

le Velankar, Sameer, van Ginkel, Glen, Alhroub, Younes, Battle, Gary M., Berrisford, John M., Conroy, Matthew J., Dana, Jose M., Gore, Swanand P., Gutmanas, Aleksandras, Haslam, Pauline, Hendrickx, Pieter M. S., Lagerstedt, Ingvar, Mir, Saqib, Fernandez Montecelo, Manuel A., Mukhopadhyay, Abhik, Oldfield, Thomas J., Patwardhan, Ardan, Sanz-García, Eduardo, Sen, Sanchayita, Slowley, Robert A., Wainwright, Michael E., Deshpande, Mandar S., Iudin, Andrii, Sahni, Gaurav, Salavert Torres, Jose, Hirshberg, Miriam, Mak, Lora, Nadzirin, Nurul, Armstrong, David R., Clark, Alice R., Smart, Oliver S., Korir, Paul K., Kleywegt, Gerard J.
Foilsithe in Nucleic Acids Res (2016)

Blind testing of routine, fully automated determination of protein structures from NMR data

le Rosato, Antonio, Aramini, James M., Arrowsmith, Cheryl, Bagaria, Anurag, Baker, David, Cavalli, Andrea, Doreleijers, Jurgen F., Eletsky, Alexander, Giachetti, Andrea, Guerry, Paul, Gutmanas, Aleksandras, Güntert, Peter, He, Yunfen, Herrmann, Torsten, Huang, Yuanpeng J., Jaravine, Victor, Jonker, Hendrik R.A., Kennedy, Michael A., Lange, Oliver F., Liu, Gaohua, Malliavin, Thérèse E., Mani, Rajeswari, Mao, Binchen, Montelione, Gaetano T., Nilges, Michael, Rossi, Paolo, van der Schot, Gijs, Schwalbe, Harald, Szyperski, Thomas A., Vendruscolo, Michele, Vernon, Robert, Vranken, Wim F., de Vries, Sjoerd, Vuister, Geerten W., Wu, Bin, Yang, Yunhuang, Bonvin, Alexandre M.J.J.
Foilsithe 2012

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

le Sali, Andrej, Berman, Helen M., Schwede, Torsten, Trewhella, Jill, Kleywegt, Gerard, Burley, Stephen K., Markley, John, Nakamura, Haruki, Adams, Paul, Bonvin, Alexandre M.J.J., Chiu, Wah, Dal Peraro, Matteo, Di Maio, Frank, Ferrin, Thomas E., Grünewald, Kay, Gutmanas, Aleksandras, Henderson, Richard, Hummer, Gerhard, Iwasaki, Kenji, Johnson, Graham, Lawson, Catherine L., Meiler, Jens, Marti-Renom, Marc A., Montelione, Gaetano T., Nilges, Michael, Nussinov, Ruth, Patwardhan, Ardan, Rappsilber, Juri, Read, Randy J., Saibil, Helen, Schröder, Gunnar F., Schwieters, Charles D., Seidel, Claus A. M., Svergun, Dmitri, Topf, Maya, Ulrich, Eldon L., Velankar, Sameer, Westbrook, John D.
Foilsithe in Structure (2015)

An intrinsically disordered proteins community for ELIXIR

le Davey, Norman E., Babu, M. Madan, Blackledge, Martin, Bridge, Alan, Capella-Gutierrez, Salvador, Dosztanyi, Zsuzsanna, Drysdale, Rachel, Edwards, Richard J., Elofsson, Arne, Felli, Isabella C., Gibson, Toby J., Gutmanas, Aleksandras, Hancock, John M., Harrow, Jen, Higgins, Desmond, Jeffries, Cy M., Le Mercier, Philippe, Mészáros, Balint, Necci, Marco, Notredame, Cedric, Orchard, Sandra, Ouzounis, Christos A., Pancsa, Rita, Papaleo, Elena, Pierattelli, Roberta, Piovesan, Damiano, Promponas, Vasilis J., Ruch, Patrick, Rustici, Gabriella, Romero, Pedro, Sarntivijai, Sirarat, Saunders, Gary, Schuler, Benjamin, Sharan, Malvika, Shields, Denis C., Sussman, Joel L., Tedds, Jonathan A., Tompa, Peter, Turewicz, Michael, Vondrasek, Jiri, Vranken, Wim F., Wallace, Bonnie Ann, Wichapong, Kanin, Tosatto, Silvio C. E.
Foilsithe in F1000Res (2019)

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive

le Young, Jasmine Y., Westbrook, John D., Feng, Zukang, Sala, Raul, Peisach, Ezra, Oldfield, Thomas J., Sen, Sanchayita, Gutmanas, Aleksandras, Armstrong, David R., Berrisford, John M., Chen, Li, Chen, Minyu, Di Costanzo, Luigi, Dimitropoulos, Dimitris, Gao, Guanghua, Ghosh, Sutapa, Gore, Swanand, Guranovic, Vladimir, Hendrickx, Pieter MS, Hudson, Brian P., Igarashi, Reiko, Ikegawa, Yasuyo, Kobayashi, Naohiro, Lawson, Catherine L., Liang, Yuhe, Mading, Steve, Mak, Lora, Mir, M. Saqib, Mukhopadhyay, Abhik, Patwardhan, Ardan, Persikova, Irina, Rinaldi, Luana, Sanz-Garcia, Eduardo, Sekharan, Monica R., Shao, Chenghua, Swaminathan, G. Jawahar, Tan, Lihua, Ulrich, Eldon L., van Ginkel, Glen, Yamashita, Reiko, Yang, Huanwang, Zhuravleva, Marina A., Quesada, Martha, Kleywegt, Gerard J., Berman, Helen M., Markley, John L., Nakamura, Haruki, Velankar, Sameer, Burley, Stephen K.
Foilsithe in Structure (2017)

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data

le Young, Jasmine Y, Westbrook, John D, Feng, Zukang, Peisach, Ezra, Persikova, Irina, Sala, Raul, Sen, Sanchayita, Berrisford, John M, Swaminathan, G Jawahar, Oldfield, Thomas J, Gutmanas, Aleksandras, Igarashi, Reiko, Armstrong, David R, Baskaran, Kumaran, Chen, Li, Chen, Minyu, Clark, Alice R, Di Costanzo, Luigi, Dimitropoulos, Dimitris, Gao, Guanghua, Ghosh, Sutapa, Gore, Swanand, Guranovic, Vladimir, Hendrickx, Pieter M S, Hudson, Brian P, Ikegawa, Yasuyo, Kengaku, Yumiko, Lawson, Catherine L, Liang, Yuhe, Mak, Lora, Mukhopadhyay, Abhik, Narayanan, Buvaneswari, Nishiyama, Kayoko, Patwardhan, Ardan, Sahni, Gaurav, Sanz-García, Eduardo, Sato, Junko, Sekharan, Monica R, Shao, Chenghua, Smart, Oliver S, Tan, Lihua, van Ginkel, Glen, Yang, Huanwang, Zhuravleva, Marina A, Markley, John L, Nakamura, Haruki, Kurisu, Genji, Kleywegt, Gerard J, Velankar, Sameer, Berman, Helen M, Burley, Stephen K
Foilsithe in Database (Oxford) (2018)