LeView: automatic and interactive generation of 2D diagrams for biomacromolecule/ligand interactions

per Caboche, Ségolène
Publicat 2013

High-Throughput Sequencing, a Versatile Weapon to Support Genome-Based Diagnosis in Infectious Diseases: Applications to Clinical Bacteriology

per Caboche, Ségolène, Audebert, Christophe, Hot, David
Publicat a Pathogens (2014)

Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data

per Caboche, Ségolène, Audebert, Christophe, Lemoine, Yves, Hot, David
Publicat 2014

Structural pattern matching of nonribosomal peptides

per Caboche, Ségolène, Pupin, Maude, Leclère, Valérie, Jacques, Phillipe, Kucherov, Gregory
Publicat 2009

Diversity of Monomers in Nonribosomal Peptides: towards the Prediction of Origin and Biological Activity

per Caboche, Ségolène, Leclère, Valérie, Pupin, Maude, Kucherov, Gregory, Jacques, Philippe
Publicat 2010

A new fingerprint to predict nonribosomal peptides activity

per Abdo, Ammar, Caboche, Ségolène, Leclère, Valérie, Jacques, Philippe, Pupin, Maude
Publicat 2012

MICRA: an automatic pipeline for fast characterization of microbial genomes from high-throughput sequencing data

per Caboche, Ségolène, Even, Gaël, Loywick, Alexandre, Audebert, Christophe, Hot, David
Publicat a Genome Biol (2017)

NORINE: a database of nonribosomal peptides

per Caboche, Ségolène, Pupin, Maude, Leclère, Valérie, Fontaine, Arnaud, Jacques, Philippe, Kucherov, Gregory
Publicat 2008

Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics

per Siegwald, Léa, Touzet, Hélène, Lemoine, Yves, Hot, David, Audebert, Christophe, Caboche, Ségolène
Publicat a PLoS One (2017)

Targeted metagenomic sequencing data of human gut microbiota associated with Blastocystis colonization

per Siegwald, Léa, Audebert, Christophe, Even, Gaël, Viscogliosi, Eric, Caboche, Ségolène, Chabé, Magali
Publicat a Sci Data (2017)

The Impact of Bioinformatics Pipelines on Microbiota Studies: Does the Analytical “Microscope” Affect the Biological Interpretation?

per Siegwald, Léa, Caboche, Ségolène, Even, Gaël, Viscogliosi, Eric, Audebert, Christophe, Chabé, Magali
Publicat a Microorganisms (2019)

A complete protocol for whole-genome sequencing of virus from clinical samples: Application to coronavirus OC43

per Maurier, Florence, Beury, Delphine, Fléchon, Léa, Varré, Jean-Stéphane, Touzet, Hélène, Goffard, Anne, Hot, David, Caboche, Ségolène
Publicat a Virology (2019)

Use of whole-genome sequencing in the molecular investigation of care-associated HCoV-OC43 infections in a hematopoietic stem cell transplant unit

per Beury, Delphine, Fléchon, Léa, Maurier, Florence, Caboche, Ségolène, Varré, Jean-Stéphane, Touzet, Hélène, Faure, Karine, Dubuisson, Jean, Hot, David, Guery, Benoit, Goffard, Anne
Publicat a J Clin Virol (2020)

Primary transcriptome analysis reveals importance of IS elements for the shaping of the transcriptional landscape of Bordetella pertussis

per Amman, Fabian, D'Halluin, Alexandre, Antoine, Rudy, Huot, Ludovic, Bibova, Ilona, Keidel, Kristina, Slupek, Stéphanie, Bouquet, Peggy, Coutte, Loïc, Caboche, Ségolène, Locht, Camille, Vecerek, Branislav, Hot, David
Publicat a RNA Biol (2018)

Genetic basis for virulence differences of various Cryptosporidium parvum carcinogenic isolates

per Audebert, Christophe, Bonardi, Franck, Caboche, Ségolène, Guyot, Karine, Touzet, Hélène, Merlin, Sophie, Gantois, Nausicaa, Creusy, Colette, Meloni, Dionigia, Mouray, Anthony, Viscogliosi, Eric, Certad, Gabriela, Benamrouz-Vanneste, Sadia, Chabé, Magali
Publicat a Sci Rep (2020)

Modelling the Impact of Chronic Cigarette Smoke Exposure in Obese Mice: Metabolic, Pulmonary, Intestinal, and Cardiac Issues

per Dubois-Deruy, Emilie, Rémy, Gaëlle, Alard, Jeanne, Kervoaze, Gwenola, Chwastyniak, Maggy, Baron, Morgane, Beury, Delphine, Siegwald, Léa, Caboche, Ségolène, Hot, David, Gosset, Philippe, Grangette, Corinne, Pinet, Florence, Wolowczuk, Isabelle, Pichavant, Muriel
Publicat a Nutrients (2020)

PDBe: Protein Data Bank in Europe

per Velankar, Sameer, Alhroub, Younes, Alili, Anaëlle, Best, Christoph, Boutselakis, Harry C., Caboche, Ségolène, Conroy, Matthew J., Dana, Jose M., van Ginkel, Glen, Golovin, Adel, Gore, Swanand P., Gutmanas, Aleksandras, Haslam, Pauline, Hirshberg, Miriam, John, Melford, Lagerstedt, Ingvar, Mir, Saqib, Newman, Laurence E., Oldfield, Tom J., Penkett, Chris J., Pineda-Castillo, Jorge, Rinaldi, Luana, Sahni, Gaurav, Sawka, Grégoire, Sen, Sanchayita, Slowley, Robert, Sousa da Silva, Alan Wilter, Suarez-Uruena, Antonio, Swaminathan, G. Jawahar, Symmons, Martyn F., Vranken, Wim F., Wainwright, Michael, Kleywegt, Gerard J.
Publicat 2011