Improved metrics for comparing structures of macromolecular assemblies determined by 3D electron-microscopy

Por Joseph, Agnel Praveen, Lagerstedt, Ingvar, Patwardhan, Ardan, Topf, Maya, Winn, Martyn
Publicado no J Struct Biol (2017)

Web-based volume slicer for 3D electron-microscopy data from EMDB

Por Salavert-Torres, José, Iudin, Andrii, Lagerstedt, Ingvar, Sanz-García, Eduardo, Kleywegt, Gerard J., Patwardhan, Ardan
Publicado no J Struct Biol (2016)

Comparing Cryo-EM Reconstructions and Validating Atomic Model Fit Using Difference Maps

Por Joseph, Agnel Praveen, Lagerstedt, Ingvar, Jakobi, Arjen, Burnley, Tom, Patwardhan, Ardan, Topf, Maya, Winn, Martyn
Publicado no J Chem Inf Model (2020)

Web-based visualisation and analysis of 3D electron-microscopy data from EMDB and PDB()

Por Lagerstedt, Ingvar, Moore, William J., Patwardhan, Ardan, Sanz-García, Eduardo, Best, Christoph, Swedlow, Jason R., Kleywegt, Gerard J.
Publicado em 2013

EMDataBank unified data resource for 3DEM

Por Lawson, Catherine L., Patwardhan, Ardan, Baker, Matthew L., Hryc, Corey, Garcia, Eduardo Sanz, Hudson, Brian P., Lagerstedt, Ingvar, Ludtke, Steven J., Pintilie, Grigore, Sala, Raul, Westbrook, John D., Berman, Helen M., Kleywegt, Gerard J., Chiu, Wah
Publicado no Nucleic Acids Res (2016)

EMDataBank.org: unified data resource for CryoEM

Por Lawson, Catherine L., Baker, Matthew L., Best, Christoph, Bi, Chunxiao, Dougherty, Matthew, Feng, Powei, van Ginkel, Glen, Devkota, Batsal, Lagerstedt, Ingvar, Ludtke, Steven J., Newman, Richard H., Oldfield, Tom J., Rees, Ian, Sahni, Gaurav, Sala, Raul, Velankar, Sameer, Warren, Joe, Westbrook, John D., Henrick, Kim, Kleywegt, Gerard J., Berman, Helen M., Chiu, Wah
Publicado em 2011

OME Remote Objects (OMERO): a flexible, model-driven data management system for experimental biology

Por Allan, Chris, Burel, Jean-Marie, Moore, Josh, Blackburn, Colin, Linkert, Melissa, Loynton, Scott, MacDonald, Donald, Moore, William J., Neves, Carlos, Patterson, Andrew, Porter, Michael, Tarkowska, Aleksandra, Loranger, Brian, Avondo, Jerome, Lagerstedt, Ingvar, Lianas, Luca, Leo, Simone, Hands, Katherine, Hay, Ron T., Patwardhan, Ardan, Best, Christoph, Kleywegt, Gerard J., Zanetti, Gianluigi, Swedlow, Jason R.
Publicado em 2012

A 3D cellular context for the macromolecular world

Por Patwardhan, Ardan, Ashton, Alun, Brandt, Robert, Butcher, Sarah, Carzaniga, Raffaella, Chiu, Wah, Collinson, Lucy, Doux, Pascal, Duke, Elizabeth, Ellisman, Mark H, Franken, Erik, Grünewald, Kay, Heriche, Jean-Karim, Koster, Abraham, Kühlbrandt, Werner, Lagerstedt, Ingvar, Larabell, Carolyn, Lawson, Catherine L, Saibil, Helen R, Sanz-García, Eduardo, Subramaniam, Sriram, Verkade, Paul, Swedlow, Jason R, Kleywegt, Gerard J
Publicado no Nat Struct Mol Biol (2014)

Data management challenges in three-dimensional EM

Por Patwardhan, Ardan, Carazo, José-Maria, Carragher, Bridget, Henderson, Richard, Heymann, J Bernard, Hill, Emma, Jensen, Grant J, Lagerstedt, Ingvar, Lawson, Catherine L, Ludtke, Steven J, Mastronarde, David, Moore, William J, Roseman, Alan, Rosenthal, Peter, Sorzano, Carlos-Oscar S, Sanz-García, Eduardo, Scheres, Sjors H W, Subramaniam, Sriram, Westbrook, John, Winn, Martyn, Swedlow, Jason R, Kleywegt, Gerard J
Publicado em 2012

Building bridges between cellular and molecular structural biology

Por Patwardhan, Ardan, Brandt, Robert, Butcher, Sarah J, Collinson, Lucy, Gault, David, Grünewald, Kay, Hecksel, Corey, Huiskonen, Juha T, Iudin, Andrii, Jones, Martin L, Korir, Paul K, Koster, Abraham J, Lagerstedt, Ingvar, Lawson, Catherine L, Mastronarde, David, McCormick, Matthew, Parkinson, Helen, Rosenthal, Peter B, Saalfeld, Stephan, Saibil, Helen R, Sarntivijai, Sirarat, Solanes Valero, Irene, Subramaniam, Sriram, Swedlow, Jason R, Tudose, Ilinca, Winn, Martyn, Kleywegt, Gerard J
Publicado no eLife (2017)

PDBe: Protein Data Bank in Europe

Por Gutmanas, Aleksandras, Alhroub, Younes, Battle, Gary M., Berrisford, John M., Bochet, Estelle, Conroy, Matthew J., Dana, Jose M., Fernandez Montecelo, Manuel A., van Ginkel, Glen, Gore, Swanand P., Haslam, Pauline, Hatherley, Rowan, Hendrickx, Pieter M.S., Hirshberg, Miriam, Lagerstedt, Ingvar, Mir, Saqib, Mukhopadhyay, Abhik, Oldfield, Thomas J., Patwardhan, Ardan, Rinaldi, Luana, Sahni, Gaurav, Sanz-García, Eduardo, Sen, Sanchayita, Slowley, Robert A., Velankar, Sameer, Wainwright, Michael E., Kleywegt, Gerard J.
Publicado em 2014

PDBe: Protein Data Bank in Europe

Por Velankar, Sameer, Alhroub, Younes, Alili, Anaëlle, Best, Christoph, Boutselakis, Harry C., Caboche, Ségolène, Conroy, Matthew J., Dana, Jose M., van Ginkel, Glen, Golovin, Adel, Gore, Swanand P., Gutmanas, Aleksandras, Haslam, Pauline, Hirshberg, Miriam, John, Melford, Lagerstedt, Ingvar, Mir, Saqib, Newman, Laurence E., Oldfield, Tom J., Penkett, Chris J., Pineda-Castillo, Jorge, Rinaldi, Luana, Sahni, Gaurav, Sawka, Grégoire, Sen, Sanchayita, Slowley, Robert, Sousa da Silva, Alan Wilter, Suarez-Uruena, Antonio, Swaminathan, G. Jawahar, Symmons, Martyn F., Vranken, Wim F., Wainwright, Michael, Kleywegt, Gerard J.
Publicado em 2011

PDBe: improved accessibility of macromolecular structure data from PDB and EMDB

Por Velankar, Sameer, van Ginkel, Glen, Alhroub, Younes, Battle, Gary M., Berrisford, John M., Conroy, Matthew J., Dana, Jose M., Gore, Swanand P., Gutmanas, Aleksandras, Haslam, Pauline, Hendrickx, Pieter M. S., Lagerstedt, Ingvar, Mir, Saqib, Fernandez Montecelo, Manuel A., Mukhopadhyay, Abhik, Oldfield, Thomas J., Patwardhan, Ardan, Sanz-García, Eduardo, Sen, Sanchayita, Slowley, Robert A., Wainwright, Michael E., Deshpande, Mandar S., Iudin, Andrii, Sahni, Gaurav, Salavert Torres, Jose, Hirshberg, Miriam, Mak, Lora, Nadzirin, Nurul, Armstrong, David R., Clark, Alice R., Smart, Oliver S., Korir, Paul K., Kleywegt, Gerard J.
Publicado no Nucleic Acids Res (2016)