Visualization Software for Molecular Assemblies

od Goddard, Thomas D, Ferrin, Thomas E
Izdano 2007

Workshop on Molecular Animation

od Bromberg, Sarina, Chiu, Wah, Ferrin, Thomas E.
Izdano 2010

Nucleic acid visualization with UCSF Chimera

od Couch, Gregory S., Hendrix, Donna K., Ferrin, Thomas E.
Izdano 2006

Computational Tools for the Interactive Exploration of Proteomic and Structural Data

od Morris, John H., Meng, Elaine C., Ferrin, Thomas E.
Izdano 2010

RRDistMaps: a UCSF Chimera tool for viewing and comparing protein distance maps

od Chen, Jonathan E., Huang, Conrad C., Ferrin, Thomas E.
Izdano u Bioinformatics (2015)

Multidomain Assembler (MDA) Generates Models of Large Multidomain Proteins

od Hertig, Samuel, Goddard, Thomas D., Johnson, Graham T., Ferrin, Thomas E.
Izdano u Biophys J (2015)

Improving the quality of protein similarity network clustering algorithms using the network edge weight distribution

od Apeltsin, Leonard, Morris, John H., Babbitt, Patricia C., Ferrin, Thomas E.
Izdano 2011

enhancedGraphics: a Cytoscape app for enhanced node graphics

od Morris, John H., Kuchinsky, Allan, Ferrin, Thomas E., Pico, Alexander R.
Izdano 2014

Using Sequence Similarity Networks for Visualization of Relationships Across Diverse Protein Superfamilies

od Atkinson, Holly J., Morris, John H., Ferrin, Thomas E., Babbitt, Patricia C.
Izdano 2009

Clinical Persistence of Chlamydia trachomatis Sexually Transmitted Strains Involves Novel Mutations in the Functional αββα Tetramer of the Tryptophan Synthase Operon

od Somboonna, Naraporn, Ziklo, Noa, Ferrin, Thomas E., Hyuk Suh, Jung, Dean, Deborah
Izdano u mBio (2019)

CyAnimator: Simple Animations of Cytoscape Networks

od Morris, John H., Vijay, Dhameliya, Federowicz, Steven, Pico, Alexander R., Ferrin, Thomas E.
Izdano u F1000Res (2015)

Tools for integrated sequence-structure analysis with UCSF Chimera

od Huang Conrad C, Couch Gregory S, Pettersen Eric F, Meng Elaine C, Ferrin Thomas E
Izdano 2006-07-01

Tools for integrated sequence-structure analysis with UCSF Chimera

od Meng, Elaine C, Pettersen, Eric F, Couch, Gregory S, Huang, Conrad C, Ferrin, Thomas E
Izdano 2006

cddApp: a Cytoscape app for accessing the NCBI conserved domain database

od Morris, John H., Wu, Allan, Yamashita, Roxanne A., Marchler-Bauer, Aron, Ferrin, Thomas E.
Izdano u Bioinformatics (2015)

The Structure Superposition Database

od Chiang, Ranyee A., Meng, Elaine C., Huang, Conrad C., Ferrin, Thomas E., Babbitt, Patricia C.
Izdano 2003

Enhancing UCSF Chimera through web services

od Huang, Conrad C., Meng, Elaine C., Morris, John H., Pettersen, Eric F., Ferrin, Thomas E.
Izdano 2014

Comparison of methods for genomic localization of gene trap sequences

od Harper, Courtney A, Huang, Conrad C, Stryke, Doug, Kawamoto, Michiko, Ferrin, Thomas E, Babbitt, Patricia C
Izdano 2006

setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges

od Morris, John H., Lotia, Samad, Wu, Allan, Doncheva, Nadezhda T., Albrecht, Mario, Pico, Alexander R., Ferrin, Thomas E
Izdano 2015

DASP3: identification of protein sequences belonging to functionally relevant groups

od Leuthaeuser, Janelle B., Morris, John H., Harper, Angela F., Ferrin, Thomas E., Babbitt, Patricia C., Fetrow, Jacquelyn S.
Izdano u BMC Bioinformatics (2016)

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

od Morris, John H, Apeltsin, Leonard, Newman, Aaron M, Baumbach, Jan, Wittkop, Tobias, Su, Gang, Bader, Gary D, Ferrin, Thomas E
Izdano 2011