Visualization Software for Molecular Assemblies

Por Goddard, Thomas D, Ferrin, Thomas E
Publicado em 2007

Workshop on Molecular Animation

Por Bromberg, Sarina, Chiu, Wah, Ferrin, Thomas E.
Publicado em 2010

Nucleic acid visualization with UCSF Chimera

Por Couch, Gregory S., Hendrix, Donna K., Ferrin, Thomas E.
Publicado em 2006

Computational Tools for the Interactive Exploration of Proteomic and Structural Data

Por Morris, John H., Meng, Elaine C., Ferrin, Thomas E.
Publicado em 2010

RRDistMaps: a UCSF Chimera tool for viewing and comparing protein distance maps

Por Chen, Jonathan E., Huang, Conrad C., Ferrin, Thomas E.
Publicado no Bioinformatics (2015)

Multidomain Assembler (MDA) Generates Models of Large Multidomain Proteins

Por Hertig, Samuel, Goddard, Thomas D., Johnson, Graham T., Ferrin, Thomas E.
Publicado no Biophys J (2015)

Improving the quality of protein similarity network clustering algorithms using the network edge weight distribution

Por Apeltsin, Leonard, Morris, John H., Babbitt, Patricia C., Ferrin, Thomas E.
Publicado em 2011

enhancedGraphics: a Cytoscape app for enhanced node graphics

Por Morris, John H., Kuchinsky, Allan, Ferrin, Thomas E., Pico, Alexander R.
Publicado em 2014

Using Sequence Similarity Networks for Visualization of Relationships Across Diverse Protein Superfamilies

Por Atkinson, Holly J., Morris, John H., Ferrin, Thomas E., Babbitt, Patricia C.
Publicado em 2009

CyAnimator: Simple Animations of Cytoscape Networks

Por Morris, John H., Vijay, Dhameliya, Federowicz, Steven, Pico, Alexander R., Ferrin, Thomas E.
Publicado no F1000Res (2015)

Tools for integrated sequence-structure analysis with UCSF Chimera

Por Huang Conrad C, Couch Gregory S, Pettersen Eric F, Meng Elaine C, Ferrin Thomas E
Publicado em 2006-07-01

Tools for integrated sequence-structure analysis with UCSF Chimera

Por Meng, Elaine C, Pettersen, Eric F, Couch, Gregory S, Huang, Conrad C, Ferrin, Thomas E
Publicado em 2006

cddApp: a Cytoscape app for accessing the NCBI conserved domain database

Por Morris, John H., Wu, Allan, Yamashita, Roxanne A., Marchler-Bauer, Aron, Ferrin, Thomas E.
Publicado no Bioinformatics (2015)

The Structure Superposition Database

Por Chiang, Ranyee A., Meng, Elaine C., Huang, Conrad C., Ferrin, Thomas E., Babbitt, Patricia C.
Publicado em 2003

Enhancing UCSF Chimera through web services

Por Huang, Conrad C., Meng, Elaine C., Morris, John H., Pettersen, Eric F., Ferrin, Thomas E.
Publicado em 2014

Comparison of methods for genomic localization of gene trap sequences

Por Harper, Courtney A, Huang, Conrad C, Stryke, Doug, Kawamoto, Michiko, Ferrin, Thomas E, Babbitt, Patricia C
Publicado em 2006

setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges

Por Morris, John H., Lotia, Samad, Wu, Allan, Doncheva, Nadezhda T., Albrecht, Mario, Pico, Alexander R., Ferrin, Thomas E
Publicado em 2015

DASP3: identification of protein sequences belonging to functionally relevant groups

Por Leuthaeuser, Janelle B., Morris, John H., Harper, Angela F., Ferrin, Thomas E., Babbitt, Patricia C., Fetrow, Jacquelyn S.
Publicado no BMC Bioinformatics (2016)

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

Por Morris, John H, Apeltsin, Leonard, Newman, Aaron M, Baumbach, Jan, Wittkop, Tobias, Su, Gang, Bader, Gary D, Ferrin, Thomas E
Publicado em 2011

An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins

Por Harper, Angela F., Leuthaeuser, Janelle B., Babbitt, Patricia C., Morris, John H., Ferrin, Thomas E., Poole, Leslie B., Fetrow, Jacquelyn S.
Publicado no PLoS Comput Biol (2017)