XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences

Por Cooper James B, Newman Aaron M
Publicado em 2007-10-01

AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number

Por Cooper James B, Newman Aaron M
Publicado em 2010-03-01

XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences

Por Newman, Aaron M, Cooper, James B
Publicado em 2007

AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number

Por Newman, Aaron M, Cooper, James B
Publicado em 2010

Global Analysis of Proline-Rich Tandem Repeat Proteins Reveals Broad Phylogenetic Diversity in Plant Secretomes

Por Newman, Aaron M., Cooper, James B.
Publicado em 2011

High Throughput Genomic Profiling of Tumor-Infiltrating Leukocytes

Por Newman, Aaron M., Alizadeh, Ash A.
Publicado no Curr Opin Immunol (2016)

Computational approaches for characterizing the tumor immune microenvironment

Por Liu, Candace C., Steen, Chloé B., Newman, Aaron M.
Publicado no Immunology (2019)

Potential clinical utility of ultrasensitive circulating tumor DNA detection with CAPP-Seq

Por Bratman, Scott V., Newman, Aaron M., Alizadeh, Ash A., Diehn, Maximilian
Publicado no Expert Rev Mol Diagn (2015)

Targeted chromatin ligation, a robust epigenetic profiling technique for small cell numbers

Por Zarnegar, Mark A., Reinitz, Felicia, Newman, Aaron M., Clarke, Michael F.
Publicado no Nucleic Acids Res (2017)

Genomic Feature Selection by Coverage Design Optimization

Por Reid, Stephen, Newman, Aaron M., Diehn, Maximilian, Alizadeh, Ash A., Tibshirani, Robert
Publicado no J Appl Stat (2018)

Profiling Cell Type Abundance and Expression in Bulk Tissues with CIBERSORTx

Por Steen, Chloé B., Liu, Chih Long, Alizadeh, Ash A., Newman, Aaron M.
Publicado no Methods Mol Biol (2020)

Profiling tumor infiltrating immune cells with CIBERSORT

Por Chen, Binbin, Khodadoust, Michael S., Liu, Chih Long, Newman, Aaron M., Alizadeh, Ash A.
Publicado no Methods Mol Biol (2018)

Data normalization considerations for digital tumor dissection

Por Newman, Aaron M., Gentles, Andrew J., Liu, Chih Long, Diehn, Maximilian, Alizadeh, Ash A.
Publicado no Genome Biol (2017)

A proteomic approach for the identification of novel lysine methyltransferase substrates

Por Levy, Dan, Liu, Chih Long, Yang, Ze, Newman, Aaron M, Alizadeh, Ash A, Utz, Paul J, Gozani, Or
Publicado em 2011

FACTERA: a practical method for the discovery of genomic rearrangements at breakpoint resolution

Por Newman, Aaron M., Bratman, Scott V., Stehr, Henning, Lee, Luke J., Liu, Chih Long, Diehn, Maximilian, Alizadeh, Ash A.
Publicado no Bioinformatics (2014)

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

Por Morris, John H, Apeltsin, Leonard, Newman, Aaron M, Baumbach, Jan, Wittkop, Tobias, Su, Gang, Bader, Gary D, Ferrin, Thomas E
Publicado em 2011

Robust enumeration of cell subsets from tissue expression profiles

Por Newman, Aaron M., Liu, Chih Long, Green, Michael R., Gentles, Andrew J., Feng, Weiguo, Xu, Yue, Hoang, Chuong D., Diehn, Maximilian, Alizadeh, Ash A.
Publicado no Nat Methods (2015)

Large-Scale and Comprehensive Immune Profiling and Functional Analysis of Normal Human Aging

Por Whiting, Chan C., Siebert, Janet, Newman, Aaron M., Du, Hong-wu, Alizadeh, Ash A., Goronzy, Jorg, Weyand, Cornelia M., Krishnan, Eswar, Fathman, C. Garrison, Maecker, Holden T.
Publicado no PLoS One (2015)

Early B cell changes predict autoimmunity following combination immune checkpoint blockade

Por Das, Rituparna, Bar, Noffar, Ferreira, Michelle, Newman, Aaron M., Zhang, Lin, Bailur, Jithendra Kini, Bacchiocchi, Antonella, Kluger, Harriet, Wei, Wei, Halaban, Ruth, Sznol, Mario, Dhodapkar, Madhav V., Dhodapkar, Kavita M.
Publicado no J Clin Invest (2018)

Systems-level analysis of age-related macular degeneration reveals global biomarkers and phenotype-specific functional networks

Por Newman, Aaron M, Gallo, Natasha B, Hancox, Lisa S, Miller, Norma J, Radeke, Carolyn M, Maloney, Michelle A, Cooper, James B, Hageman, Gregory S, Anderson, Don H, Johnson, Lincoln V, Radeke, Monte J
Publicado em 2012