Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements)

Por Giresi, Paul G., Lieb, Jason D.
Publicado em 2009

Global analysis of gene expression patterns during disuse atrophy in rat skeletal muscle

Por Stevenson, Eric J, Giresi, Paul G, Koncarevic, Alan, Kandarian, Susan C
Publicado em 2003

Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae

Por Azvolinsky, Anna, Giresi, Paul G., Lieb, Jason D., Zakian, Virginia A.
Publicado em 2009

Using FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) to isolate active regulatory DNA

Por Simon, Jeremy M., Giresi, Paul G., Davis, Ian J., Lieb, Jason D.
Publicado em 2012

ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions

Por Rashid, Naim U, Giresi, Paul G, Ibrahim, Joseph G, Sun, Wei, Lieb, Jason D
Publicado em 2011

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

Por Giresi, Paul G., Kim, Jonghwan, McDaniell, Ryan M., Iyer, Vishwanath R., Lieb, Jason D.
Publicado em 2007

Transposition of native chromatin for multimodal regulatory analysis and personal epigenomics

Por Buenrostro, Jason D., Giresi, Paul G., Zaba, Lisa C., Chang, Howard Y., Greenleaf, William J.
Publicado em 2013

X-chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation

Por Ercan, Sevinc, Giresi, Paul G., Whittle, Christina M., Zhang, Xinmin, Green, Roland D., Lieb, Jason D.
Publicado em 2007

STAT3 acts through pre-existing nucleosome-depleted regions bound by FOS during an epigenetic switch linking inflammation to cancer

Por Fleming, Joseph D, Giresi, Paul G, Lindahl-Allen, Marianne, Krall, Elsa B, Lieb, Jason D, Struhl, Kevin
Publicado no Epigenetics Chromatin (2015)

A novel ATAC-seq approach reveals lineage-specific reinforcement of the open chromatin landscape via cooperation between BAF and p63

Por Bao, Xiaomin, Rubin, Adam J., Qu, Kun, Zhang, Jiajing, Giresi, Paul G., Chang, Howard Y., Khavari, Paul A.
Publicado no Genome Biol (2015)

Individuality and variation of personal regulomes in primary human T cells

Por Qu, Kun, Zaba, Lisa C., Giresi, Paul G., Li, Rui, Longmire, Michelle, Kim, Youn H., Greenleaf, William J., Chang, Howard Y.
Publicado no Cell Syst (2015)

A map of open chromatin in human pancreatic islets

Por Gaulton, Kyle J., Nammo, Takao, Pasquali, Lorenzo, Simon, Jeremy M., Giresi, Paul G., Fogarty, Marie P., Panhuis, Tami M., Mieczkowski, Piotr, Secchi, Antonio, Bosco, Domenico, Berney, Thierry, Montanya, Eduard, Mohlke, Karen L., Lieb, Jason D., Ferrer, Jorge
Publicado em 2010

Hierarchical mechanisms for transcription factor-mediated reprogramming of fibroblasts to neurons

Por Wapinski, Orly L., Vierbuchen, Thomas, Qu, Kun, Lee, Qian Yi, Chanda, Soham, Fuentes, Daniel R., Giresi, Paul G., Ng, Yi Han, Marro, Samuele, Neff, Norma F., Drechsel, Daniela, Martynoga, Ben, Castro, Diogo S., Webb, Ashley E., Brunet, Anne, Guillemot, Francois, Chang, Howard Y., Wernig, Marius
Publicado em 2013

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

Por Song, Lingyun, Zhang, Zhancheng, Grasfeder, Linda L., Boyle, Alan P., Giresi, Paul G., Lee, Bum-Kyu, Sheffield, Nathan C., Gräf, Stefan, Huss, Mikael, Keefe, Damian, Liu, Zheng, London, Darin, McDaniell, Ryan M., Shibata, Yoichiro, Showers, Kimberly A., Simon, Jeremy M., Vales, Teresa, Wang, Tianyuan, Winter, Deborah, Zhang, Zhuzhu, Clarke, Neil D., Birney, Ewan, Iyer, Vishwanath R., Crawford, Gregory E., Lieb, Jason D., Furey, Terrence S.
Publicado em 2011