Identification and correction of previously unreported spatial phenomena using raw Illumina BeadArray data

מאת Smith, Mike L, Dunning, Mark J, Tavaré, Simon, Lynch, Andy G
יצא לאור 2010

Distinct Concentration-Dependent Molecular Pathways Regulate Bone Cell Responses to Cobalt and Chromium Exposure from Joint Replacement Prostheses

מאת Shah, Karan M., Dunning, Mark J., Gartland, Alison, Wilkinson, J. Mark
הוצא לאור ב Int J Mol Sci (2021)

BeadArray Expression Analysis Using Bioconductor

מאת Ritchie, Matthew E., Dunning, Mark J., Smith, Mike L., Shi, Wei, Lynch, Andy G.
יצא לאור 2011

Statistical issues in the analysis of Illumina data

מאת Dunning, Mark J, Barbosa-Morais, Nuno L, Lynch, Andy G, Tavaré, Simon, Ritchie, Matthew E
יצא לאור 2008

Spike-in validation of an Illumina-specific variance-stabilizing transformation

מאת Dunning, Mark J, Ritchie, Matthew E, Barbosa-Morais, Nuno L, Tavaré, Simon, Lynch, Andy G
יצא לאור 2008

The cost of reducing starting RNA quantity for Illumina BeadArrays: A bead-level dilution experiment

מאת Lynch, Andy G, Hadfield, James, Dunning, Mark J, Osborne, Michelle, Thorne, Natalie P, Tavaré, Simon
יצא לאור 2010

Calling Sample Mix-Ups in Cancer Population Studies

מאת Lynch, Andy G., Chin, Suet-Feung, Dunning, Mark J., Caldas, Carlos, Tavaré, Simon, Curtis, Christina
יצא לאור 2012

Genome-driven integrated classification of breast cancer validated in over 7,500 samples

מאת Ali, H Raza, Rueda, Oscar M, Chin, Suet-Feung, Curtis, Christina, Dunning, Mark J, Aparicio, Samuel AJR, Caldas, Carlos
יצא לאור 2014

A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data

מאת Barbosa-Morais, Nuno L., Dunning, Mark J., Samarajiwa, Shamith A., Darot, Jeremy F. J., Ritchie, Matthew E., Lynch, Andy G., Tavaré, Simon
יצא לאור 2010

Mining Human Prostate Cancer Datasets: The “camcAPP” Shiny App()

מאת Dunning, Mark J., Vowler, Sarah L., Lalonde, Emilie, Ross-Adams, Helen, Boutros, Paul, Mills, Ian G., Lynch, Andy G., Lamb, Alastair D.
הוצא לאור ב EBioMedicine (2017)

PMC42, a breast progenitor cancer cell line, has normal-like mRNA and microRNA transcriptomes

מאת Git, Anna, Spiteri, Inmaculada, Blenkiron, Cherie, Dunning, Mark J, Pole, Jessica CM, Chin, Suet-Feung, Wang, Yanzhong, Smith, James, Livesey, Frederick J, Caldas, Carlos
יצא לאור 2008

The pitfalls of platform comparison: DNA copy number array technologies assessed

מאת Curtis, Christina, Lynch, Andy G, Dunning, Mark J, Spiteri, Inmaculada, Marioni, John C, Hadfield, James, Chin, Suet-Feung, Brenton, James D, Tavaré, Simon, Caldas, Carlos
יצא לאור 2009

Identification of potential therapeutic targets in prostate cancer through a cross‐species approach

מאת Jurmeister, Sarah, Ramos‐Montoya, Antonio, Sandi, Chiranjeevi, Pértega‐Gomes, Nelma, Wadhwa, Karan, Lamb, Alastair D, Dunning, Mark J, Attig, Jan, Carroll, Jason S, Fryer, Lee GD, Felisbino, Sérgio L, Neal, David E
הוצא לאור ב EMBO Mol Med (2018)

Fostering accessible online education using Galaxy as an e-learning platform

מאת Serrano-Solano, Beatriz, Föll, Melanie C., Gallardo-Alba, Cristóbal, Erxleben, Anika, Rasche, Helena, Hiltemann, Saskia, Fahrner, Matthias, Dunning, Mark J., Schulz, Marcel H., Scholtz, Beáta, Clements, Dave, Nekrutenko, Anton, Batut, Bérénice, Grüning, Björn A.
הוצא לאור ב PLoS Comput Biol (2021)

MicroRNA expression profiling of human breast cancer identifies new markers of tumor subtype

מאת Blenkiron, Cherie, Goldstein, Leonard D, Thorne, Natalie P, Spiteri, Inmaculada, Chin, Suet-Feung, Dunning, Mark J, Barbosa-Morais, Nuno L, Teschendorff, Andrew E, Green, Andrew R, Ellis, Ian O, Tavaré, Simon, Caldas, Carlos, Miska, Eric A
יצא לאור 2007

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

מאת Ross-Innes, Caryn S., Stark, Rory, Teschendorff, Andrew E., Holmes, Kelly A., Ali, H. Raza, Dunning, Mark J., Brown, Gordon D., Gojis, Ondrej, Ellis, Ian O., Green, Andrew R., Ali, Simak, Chin, Suet-Feung, Palmieri, Carlo, Caldas, Carlos, Carroll, Jason S.
יצא לאור 2012

HES5 silencing is an early and recurrent change in prostate tumourigenesis

מאת Massie, Charles E, Spiteri, Inmaculada, Ross-Adams, Helen, Luxton, Hayley, Kay, Jonathan, Whitaker, Hayley C, Dunning, Mark J, Lamb, Alastair D, Ramos-Montoya, Antonio, Brewer, Daniel S, Cooper, Colin S, Eeles, Rosalind, Warren, Anne Y, Tavaré, Simon, Neal, David E, Lynch, Andy G
הוצא לאור ב Endocr Relat Cancer (2015)

Identification and validation of DOCK4 as a potential biomarker for risk of bone metastasis development in patients with early breast cancer

מאת Westbrook, Jules A, Wood, Steven L, Cairns, David A, McMahon, Kathryn, Gahlaut, Renu, Thygesen, Helene, Shires, Mike, Roberts, Stephanie, Marshall, Helen, Oliva, Maria R, Dunning, Mark J, Hanby, Andrew M, Selby, Peter J, Speirs, Valerie, Mavria, Georgia, Coleman, Robert E, Brown, Janet E
הוצא לאור ב J Pathol (2019)

5-hydroxymethylcytosine marks promoters in colon that resist DNA hypermethylation in cancer

מאת Uribe-Lewis, Santiago, Stark, Rory, Carroll, Thomas, Dunning, Mark J, Bachman, Martin, Ito, Yoko, Stojic, Lovorka, Halim, Silvia, Vowler, Sarah L, Lynch, Andy G, Delatte, Benjamin, de Bony, Eric J, Colin, Laurence, Defrance, Matthieu, Krueger, Felix, Silva, Ana-Luisa, ten Hoopen, Rogier, Ibrahim, Ashraf EK, Fuks, François, Murrell, Adele
הוצא לאור ב Genome Biol (2015)

ZNF703 is a common Luminal B breast cancer oncogene that differentially regulates luminal and basal progenitors in human mammary epithelium

מאת Holland, Daniel G, Burleigh, Angela, Git, Anna, Goldgraben, Mae A, Perez-Mancera, Pedro A, Chin, Suet-Feung, Hurtado, Antonio, Bruna, Alejandra, Ali, H Raza, Greenwood, Wendy, Dunning, Mark J, Samarajiwa, Shamith, Menon, Suraj, Rueda, Oscar M, Lynch, Andy G, McKinney, Steven, Ellis, Ian O, Eaves, Connie J, Carroll, Jason S, Curtis, Christina, Aparicio, Samuel, Caldas, Carlos
יצא לאור 2011