Employing conservation of co-expression to improve functional inference

Por Daub, Carsten O, Sonnhammer, Erik LL
Publicado em 2008

SDRF2GRAPH – a visualization tool of a spreadsheet-based description of experimental processes

Por Kawaji, Hideya, Hayashizaki, Yoshihide, Daub, Carsten O
Publicado em 2009

TagDust—a program to eliminate artifacts from next generation sequencing data

Por Lassmann, Timo, Hayashizaki, Yoshihide, Daub, Carsten O.
Publicado em 2009

NGSView: an extensible open source editor for next-generation sequencing data

Por Arner, Erik, Hayashizaki, Yoshihide, Daub, Carsten O.
Publicado em 2010

SAMStat: monitoring biases in next generation sequencing data

Por Lassmann, Timo, Hayashizaki, Yoshihide, Daub, Carsten O.
Publicado em 2011

Estimating mutual information using B-spline functions – an improved similarity measure for analysing gene expression data

Por Steuer Ralf, Daub Carsten O, Selbig Joachim, Kloska Sebastian
Publicado em 2004-08-01

Estimating mutual information using B-spline functions – an improved similarity measure for analysing gene expression data

Por Daub, Carsten O, Steuer, Ralf, Selbig, Joachim, Kloska, Sebastian
Publicado em 2004

pre-miRNA profiles obtained through application of locked nucleic acids and deep sequencing reveals complex 5′/3′ arm variation including concomitant cleavage and polyuridylation p...

Por Burroughs, A. Maxwell, Kawano, Mitsuoki, Ando, Yoshinari, Daub, Carsten O., Hayashizaki, Yoshihide
Publicado em 2012

MiR-107 and MiR-185 Can Induce Cell Cycle Arrest in Human Non Small Cell Lung Cancer Cell Lines

Por Takahashi, Yukari, Forrest, Alistair R. R., Maeno, Emi, Hashimoto, Takehiro, Daub, Carsten O., Yasuda, Jun
Publicado em 2009

Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines

Por Rye, Morten, Sandve, Geir Kjetil, Daub, Carsten O, Kawaji, Hideya, Carninci, Piero, Forrest, Alistair RR, Drabløs, Finn
Publicado em 2014

Transcriptional features of genomic regulatory blocks

Por Akalin, Altuna, Fredman, David, Arner, Erik, Dong, Xianjun, Bryne, Jan Christian, Suzuki, Harukazu, Daub, Carsten O, Hayashizaki, Yoshihide, Lenhard, Boris
Publicado em 2009

Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data

Por Balwierz, Piotr J, Carninci, Piero, Daub, Carsten O, Kawai, Jun, Hayashizaki, Yoshihide, Van Belle, Werner, Beisel, Christian, van Nimwegen, Erik
Publicado em 2009

The Short Non-Coding Transcriptome of the Protozoan Parasite Trypanosoma cruzi

Por Franzén, Oscar, Arner, Erik, Ferella, Marcela, Nilsson, Daniel, Respuela, Patricia, Carninci, Piero, Hayashizaki, Yoshihide, Åslund, Lena, Andersson, Björn, Daub, Carsten O.
Publicado em 2011

System-wide analysis of the transcriptional network of human myelomonocytic leukemia cells predicts attractor structure and phorbol-ester-induced differentiation and dedifferentiat...

Por Sakata, Katsumi, Ohyanagi, Hajime, Sato, Shinji, Nobori, Hiroya, Hayashi, Akiko, Ishii, Hideshi, Daub, Carsten O., Kawai, Jun, Suzuki, Harukazu, Saito, Toshiyuki
Publicado no Sci Rep (2015)

Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns

Por Arakawa Takahiro, Carninci Piero, Suzuki Harukazu, Kawai Jun, Kubosaki Atsutaka, Saito Rintaro, Arner Erik, Kratz Anton, Tomita Masaru, Hayashizaki Yoshihide, Daub Carsten O
Publicado em 2010-04-01

Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns

Por Kratz, Anton, Arner, Erik, Saito, Rintaro, Kubosaki, Atsutaka, Kawai, Jun, Suzuki, Harukazu, Carninci, Piero, Arakawa, Takahiro, Tomita, Masaru, Hayashizaki, Yoshihide, Daub, Carsten O
Publicado em 2010

Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE

Por Vitezic, Morana, Lassmann, Timo, Forrest, Alistair R. R., Suzuki, Masanori, Tomaru, Yasuhiro, Kawai, Jun, Carninci, Piero, Suzuki, Harukazu, Hayashizaki, Yoshihide, Daub, Carsten O.
Publicado em 2010

Nonimmunoglobulin target loci of activation-induced cytidine deaminase (AID) share unique features with immunoglobulin genes

Por Kato, Lucia, Begum, Nasim A., Burroughs, A. Maxwell, Doi, Tomomitsu, Kawai, Jun, Daub, Carsten O., Kawaguchi, Takahisa, Matsuda, Fumihiko, Hayashizaki, Yoshihide, Honjo, Tasuku
Publicado em 2012

Optimization of turn-back primers in isothermal amplification

Por Kimura, Yasumasa, de Hoon, Michiel J. L., Aoki, Shintaro, Ishizu, Yuri, Kawai, Yuki, Kogo, Yasushi, Daub, Carsten O., Lezhava, Alexander, Arner, Erik, Hayashizaki, Yoshihide
Publicado em 2011

Hidden layers of human small RNAs

Por Kawaji, Hideya, Nakamura, Mari, Takahashi, Yukari, Sandelin, Albin, Katayama, Shintaro, Fukuda, Shiro, Daub, Carsten O, Kai, Chikatoshi, Kawai, Jun, Yasuda, Jun, Carninci, Piero, Hayashizaki, Yoshihide
Publicado em 2008