Genome informatics: taming the avalanche of genomic data

per Sonnhammer, Erik LL
Publicat 2005

Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER

per Wistrand, Markus, Sonnhammer, Erik LL
Publicat 2005

Scoredist: A simple and robust protein sequence distance estimator

per Sonnhammer, Erik LL, Hollich, Volker
Publicat 2005

Kalign – an accurate and fast multiple sequence alignment algorithm

per Lassmann, Timo, Sonnhammer, Erik LL
Publicat 2005

Automatic extraction of reliable regions from multiple sequence alignments

per Lassmann, Timo, Sonnhammer, Erik LL
Publicat 2007

Employing conservation of co-expression to improve functional inference

per Daub, Carsten O, Sonnhammer, Erik LL
Publicat 2008

Global networks of functional coupling in eukaryotes from comprehensive data integration

per Alexeyenko, Andrey, Sonnhammer, Erik L.L.
Publicat 2009

InParanoid 8: orthology analysis between 273 proteomes, mostly eukaryotic

per Sonnhammer, Erik L.L., Östlund, Gabriel
Publicat a Nucleic Acids Res (2014)

Orthology confers intron position conservation

per Forslund Kristoffer, Henricson Anna, Sonnhammer Erik LL
Publicat 2010-07-01

Genomic Gene Clustering Analysis of Pathways in Eukaryotes

per Lee, Jennifer M., Sonnhammer, Erik L.L.
Publicat 2003

Orthology confers intron position conservation

per Henricson, Anna, Forslund, Kristoffer, Sonnhammer, Erik LL
Publicat 2010

Domain architecture conservation in orthologs

per Forslund, Kristoffer, Pekkari, Isabella, Sonnhammer, Erik LL
Publicat 2011

Comprehensive Analysis of Orthologous Protein Domains Using the HOPS Database

per Storm, Christian E.V., Sonnhammer, Erik L.L.
Publicat 2003

Advantages of combined transmembrane topology and signal peptide prediction—the Phobius web server

per Käll, Lukas, Krogh, Anders, Sonnhammer, Erik L.L.
Publicat 2007

A general model of G protein-coupled receptor sequences and its application to detect remote homologs

per Wistrand, Markus, Käll, Lukas, Sonnhammer, Erik L.L.
Publicat 2006

PathwAX: a web server for network crosstalk based pathway annotation

per Ogris, Christoph, Helleday, Thomas, Sonnhammer, Erik L.L.
Publicat a Nucleic Acids Res (2016)

MetaTM - a consensus method for transmembrane protein topology prediction

per Klammer, Martin, Messina, David N, Schmitt, Thomas, Sonnhammer, Erik LL
Publicat 2009

Functional characterization in Caenorhabditis elegans of transmembrane worm-human orthologs

per Henricson, Anna, Sonnhammer, Erik LL, Baillie, David L, Gomes, Ana Vaz
Publicat 2004

Joining forces in the quest for orthologs

per Gabaldón, Toni, Dessimoz, Christophe, Huxley-Jones, Julie, Vilella, Albert J, Sonnhammer, Erik LL, Lewis, Suzanna
Publicat 2009

Profiled support vector machines for antisense oligonucleotide efficacy prediction

per Camps-Valls, Gustavo, Chalk, Alistair M, Serrano-López, Antonio J, Martín-Guerrero, José D, Sonnhammer, Erik LL
Publicat 2004