NEArender: an R package for functional interpretation of ‘omics’ data via network enrichment analysis

Autor Jeggari, Ashwini, Alexeyenko, Andrey
Vydáno v BMC Bioinformatics (2017)

Global networks of functional coupling in eukaryotes from comprehensive data integration

Autor Alexeyenko, Andrey, Sonnhammer, Erik L.L.
Vydáno 2009

Distinguishing between driver and passenger mutations in individual cancer genomes by network enrichment analysis

Autor Merid, Simon Kebede, Goranskaya, Daria, Alexeyenko, Andrey
Vydáno v BMC Bioinformatics (2014)

Calcyon mRNA expression in the frontal-striatal circuitry and its relationship to vesicular processes and ADHD

Autor Heijtz, Rochellys Diaz, Alexeyenko, Andrey, Castellanos, F Xavier
Vydáno 2007

The regulation of hydroxysteroid 17β-dehydrogenase type 1 and 2 gene expression in breast cancer cell lines by estradiol, dihydrotestosterone, microRNAs, and genes related to breas...

Autor Hilborn, Erik, Stål, Olle, Alexeyenko, Andrey, Jansson, Agneta
Vydáno v Oncotarget (2017)

Network Analysis of Functional Genomics Data: Application to Avian Sex-Biased Gene Expression

Autor Frings, Oliver, Mank, Judith E., Alexeyenko, Andrey, Sonnhammer, Erik L. L.
Vydáno 2012

Statistical Assessment of Crosstalk Enrichment between Gene Groups in Biological Networks

Autor McCormack, Theodore, Frings, Oliver, Alexeyenko, Andrey, Sonnhammer, Erik L. L.
Vydáno 2013

Protein profiling and network enrichment analysis in individuals before and after the onset of rheumatoid arthritis

Autor Brink, Mikael, Lundquist, Anders, Alexeyenko, Andrey, Lejon, Kristina, Rantapää-Dahlqvist, Solbritt
Vydáno v Arthritis Res Ther (2019)

Prediction of response to anti-cancer drugs becomes robust via network integration of molecular data

Autor Franco, Marcela, Jeggari, Ashwini, Peuget, Sylvain, Böttger, Franziska, Selivanova, Galina, Alexeyenko, Andrey
Vydáno v Sci Rep (2019)

EviNet: a web platform for network enrichment analysis with flexible definition of gene sets

Autor Jeggari, Ashwini, Alekseenko, Zhanna, Petrov, Iurii, Dias, José M, Ericson, Johan, Alexeyenko, Andrey
Vydáno v Nucleic Acids Res (2018)

Comparative interactomics with Funcoup 2.0

Autor Alexeyenko, Andrey, Schmitt, Thomas, Tjärnberg, Andreas, Guala, Dmitri, Frings, Oliver, Sonnhammer, Erik L. L.
Vydáno 2012

Network enrichment analysis: extension of gene-set enrichment analysis to gene networks

Autor Alexeyenko, Andrey, Lee, Woojoo, Pernemalm, Maria, Guegan, Justin, Dessen, Philippe, Lazar, Vladimir, Lehtiö, Janne, Pawitan, Yudi
Vydáno 2012

Identifying and Assessing Interesting Subgroups in a Heterogeneous Population

Autor Lee, Woojoo, Alexeyenko, Andrey, Pernemalm, Maria, Guegan, Justine, Dessen, Philippe, Lazar, Vladimir, Lehtiö, Janne, Pawitan, Yudi
Vydáno v Biomed Res Int (2015)

Novel Genes and Pathways Modulated by Syndecan-1: Implications for the Proliferation and Cell-Cycle Regulation of Malignant Mesothelioma Cells

Autor Szatmári, Tünde, Mundt, Filip, Heidari-Hamedani, Ghazal, Zong, Fang, Ferolla, Elena, Alexeyenko, Andrey, Hjerpe, Anders, Dobra, Katalin
Vydáno 2012

Inhibition of tumor cell proliferation and motility by fibroblasts is both contact and soluble factor dependent

Autor Alkasalias, Twana, Flaberg, Emilie, Kashuba, Vladimir, Alexeyenko, Andrey, Pavlova, Tatiana, Savchenko, Andrii, Szekely, Laszlo, Klein, George, Guven, Hayrettin
Vydáno v Proc Natl Acad Sci U S A (2014)

Dynamic Zebrafish Interactome Reveals Transcriptional Mechanisms of Dioxin Toxicity

Autor Alexeyenko, Andrey, Wassenberg, Deena M., Lobenhofer, Edward K., Yen, Jerry, Linney, Elwood, Sonnhammer, Erik L. L., Meyer, Joel N.
Vydáno 2010

Protein Expression in Tonsillar and Base of Tongue Cancer and in Relation to Human Papillomavirus (HPV) and Clinical Outcome

Autor Ramqvist, Torbjörn, Näsman, Anders, Franzén, Bo, Bersani, Cinzia, Alexeyenko, Andrey, Becker, Susanne, Haeggblom, Linnea, Kolev, Aeneas, Dalianis, Tina, Munck-Wikland, Eva
Vydáno v Int J Mol Sci (2018)

Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines

Autor Akan, Pelin, Alexeyenko, Andrey, Costea, Paul Igor, Hedberg, Lilia, Solnestam, Beata Werne, Lundin, Sverker, Hällman, Jimmie, Lundberg, Emma, Uhlén, Mathias, Lundeberg, Joakim
Vydáno 2012

Protein profiling of fine‐needle aspirates reveals subtype‐associated immune signatures and involvement of chemokines in breast cancer

Autor Franzén, Bo, Alexeyenko, Andrey, Kamali‐Moghaddam, Masood, Hatschek, Thomas, Kanter, Lena, Ramqvist, Torbjörn, Kierkegaard, Jonas, Masucci, Giuseppe, Auer, Gert, Landegren, Ulf, Lewensohn, Rolf
Vydáno v Mol Oncol (2019)

Genetic Association of sequence variants near AGER/NOTCH4 and Dementia

Autor Bennet, Anna M., Reynolds, Chandra A., Eriksson, Ulrika K., Hong, Mun-gwan, Blennow, Kaj, Gatz, Margaret, Alexeyenko, Andrey, Pedersen, Nancy L., Prince, Jonathan A.
Vydáno 2011