Finding regulatory elements and regulatory motifs: a general probabilistic framework

Por van Nimwegen, Erik
Publicado em 2007

Inferring Contacting Residues within and between Proteins: What Do the Probabilities Mean?

Por van Nimwegen, Erik
Publicado no PLoS Comput Biol (2016)

Authors' Reply

Por van Nimwegen, Erik, Zavolan, Mihaela
Publicado em 2006

Universal patterns of purifying selection at noncoding positions in bacteria

Por Molina, Nacho, van Nimwegen, Erik
Publicado em 2008

Accurate prediction of protein–protein interactions from sequence alignments using a Bayesian method

Por Burger, Lukas, van Nimwegen, Erik
Publicado em 2008

The evolution of domain-content in bacterial genomes

Por Molina, Nacho, van Nimwegen, Erik
Publicado em 2008

Disentangling Direct from Indirect Co-Evolution of Residues in Protein Alignments

Por Burger, Lukas, van Nimwegen, Erik
Publicado em 2010

Transcription Factor Binding Site Positioning in Yeast: Proximal Promoter Motifs Characterize TATA-Less Promoters

Por Erb, Ionas, van Nimwegen, Erik
Publicado em 2011

Nucleosome Free Regions in Yeast Promoters Result from Competitive Binding of Transcription Factors That Interact with Chromatin Modifiers

Por Ozonov, Evgeniy A., van Nimwegen, Erik
Publicado em 2013

Splice Variation in Mouse Full-Length cDNAs Identified by Mapping to the Mouse Genome

Por Zavolan, Mihaela, van Nimwegen, Erik, Gaasterland, Terry
Publicado em 2002

Neutral evolution of mutational robustness

Por van Nimwegen, Erik, Crutchfield, James P., Huynen, Martijn
Publicado em 1999

PhyloGibbs: A Gibbs Sampling Motif Finder That Incorporates Phylogeny

Por Siddharthan, Rahul, Siggia, Eric D, van Nimwegen, Erik
Publicado em 2005

Quantitative analysis of persister fractions suggests different mechanisms of formation among environmental isolates of E. coli

Por Hofsteenge, Niels, van Nimwegen, Erik, Silander, Olin K
Publicado em 2013

Expression noise facilitates the evolution of gene regulation

Por Wolf, Luise, Silander, Olin K, van Nimwegen, Erik
Publicado no eLife (2015)

SPA: A Probabilistic Algorithm for Spliced Alignment

Por van Nimwegen, Erik, Paul, Nicodeme, Sheridan, Robert, Zavolan, Mihaela
Publicado em 2006

SwissRegulon: a database of genome-wide annotations of regulatory sites

Por Pachkov, Mikhail, Erb, Ionas, Molina, Nacho, van Nimwegen, Erik
Publicado em 2007

Inference of miRNA targets using evolutionary conservation and pathway analysis

Por Gaidatzis, Dimos, van Nimwegen, Erik, Hausser, Jean, Zavolan, Mihaela
Publicado em 2007

Inference of miRNA targets using evolutionary conservation and pathway analysis

Por Gaidatzis, Dimos, van Nimwegen, Erik, Hausser, Jean, Zavolan, Mihaela
Publicado em 2007

Probabilistic clustering of sequences: Inferring new bacterial regulons by comparative genomics

Por van Nimwegen, Erik, Zavolan, Mihaela, Rajewsky, Nikolaus, Siggia, Eric D.
Publicado em 2002

Computational Analysis of Full-length cDNAs Reveals Frequent Coupling Between Transcriptional and Splicing Programs

Por Chern, Tzu-Ming, Paul, Nicodeme, van Nimwegen, Erik, Zavolan, Mihaela
Publicado em 2008