Time-resolved gene expression profiling during reprogramming of C/EBPα-pulsed B cells into iPS cells

по Di Stefano, Bruno, Collombet, Samuel, Graf, Thomas
Опубликовано в: Sci Data (2014)

A Transcription Factor Pulse Can Prime Chromatin for Heritable Transcriptional Memory

по Iberg-Badeaux, Aimee, Collombet, Samuel, Laurent, Benoit, van Oevelen, Chris, Chin, Kuo-Kai, Thieffry, Denis, Graf, Thomas, Shi, Yang
Опубликовано в: Mol Cell Biol (2017)

Logical modeling of lymphoid and myeloid cell specification and transdifferentiation

по Collombet, Samuel, van Oevelen, Chris, Sardina Ortega, Jose Luis, Abou-Jaoudé, Wassim, Di Stefano, Bruno, Thomas-Chollier, Morgane, Graf, Thomas, Thieffry, Denis
Опубликовано в: Proc Natl Acad Sci U S A (2017)

Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements

по Thierion, Elodie, Le Men, Johan, Collombet, Samuel, Hernandez, Céline, Coulpier, Fanny, Torbey, Patrick, Thomas-Chollier, Morgane, Noordermeer, Daan, Charnay, Patrick, Gilardi-Hebenstreit, Pascale
Опубликовано в: PLoS Genet (2017)

Cooperation, cis-interactions, versatility and evolutionary plasticity of multiple cis-acting elements underlie krox20 hindbrain regulation

по Torbey, Patrick, Thierion, Elodie, Collombet, Samuel, de Cian, Anne, Desmarquet-Trin-Dinh, Carole, Dura, Mathilde, Concordet, Jean-Paul, Charnay, Patrick, Gilardi-Hebenstreit, Pascale
Опубликовано в: PLoS Genet (2018)

C/EBPα Activates Pre-existing and De Novo Macrophage Enhancers during Induced Pre-B Cell Transdifferentiation and Myelopoiesis

по van Oevelen, Chris, Collombet, Samuel, Vicent, Guillermo, Hoogenkamp, Maarten, Lepoivre, Cyrille, Badeaux, Aimee, Bussmann, Lars, Sardina, Jose Luis, Thieffry, Denis, Beato, Miguel, Shi, Yang, Bonifer, Constanze, Graf, Thomas
Опубликовано в: Stem Cell Reports (2015)

Dynamic reversal of random X-Chromosome inactivation during iPSC reprogramming

по Janiszewski, Adrian, Talon, Irene, Chappell, Joel, Collombet, Samuel, Song, Juan, De Geest, Natalie, To, San Kit, Bervoets, Greet, Marin-Bejar, Oskar, Provenzano, Caterina, Vanheer, Lotte, Marine, Jean-Christophe, Rambow, Florian, Pasque, Vincent
Опубликовано в: Genome Res (2019)

SPEN integrates transcriptional and epigenetic control of X-inactivation

по Dossin, François, Pinheiro, Inês, Żylicz, Jan J., Roensch, Julia, Collombet, Samuel, Le Saux, Agnès, Chelmicki, Tomasz, Attia, Mikaël, Kapoor, Varun, Zhan, Ye, Dingli, Florent, Loew, Damarys, Mercher, Thomas, Dekker, Job, Heard, Edith
Опубликовано в: Nature (2020)

Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming

по Stadhouders, Ralph, Vidal, Enrique, Serra, François, Di Stefano, Bruno, Le Dily, François, Quilez, Javier, Gomez, Antonio, Collombet, Samuel, Berenguer, Clara, Cuartero, Yasmina, Hecht, Jochen, Filion, Guillaume J., Beato, Miguel, Marti-Renom, Marc A., Graf, Thomas
Опубликовано в: Nat Genet (2018)

RSAT 2018: regulatory sequence analysis tools 20th anniversary

по Nguyen, Nga Thi Thuy, Contreras-Moreira, Bruno, Castro-Mondragon, Jaime A, Santana-Garcia, Walter, Ossio, Raul, Robles-Espinoza, Carla Daniela, Bahin, Mathieu, Collombet, Samuel, Vincens, Pierre, Thieffry, Denis, van Helden, Jacques, Medina-Rivera, Alejandra, Thomas-Chollier, Morgane
Опубликовано в: Nucleic Acids Res (2018)

Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate

по Sardina, Jose Luis, Collombet, Samuel, Tian, Tian V., Gómez, Antonio, Di Stefano, Bruno, Berenguer, Clara, Brumbaugh, Justin, Stadhouders, Ralph, Segura-Morales, Carolina, Gut, Marta, Gut, Ivo G., Heath, Simon, Aranda, Sergi, Di Croce, Luciano, Hochedlinger, Konrad, Thieffry, Denis, Graf, Thomas
Опубликовано в: Cell Stem Cell (2018)

Constitutively Active SMAD2/3 Are Broad-Scope Potentiators of Transcription-Factor-Mediated Cellular Reprogramming

по Ruetz, Tyson, Pfisterer, Ulrich, Di Stefano, Bruno, Ashmore, James, Beniazza, Meryam, Tian, Tian V., Kaemena, Daniel F., Tosti, Luca, Tan, Wenfang, Manning, Jonathan R., Chantzoura, Eleni, Ottosson, Daniella Rylander, Collombet, Samuel, Johnsson, Anna, Cohen, Erez, Yusa, Kosuke, Linnarsson, Sten, Graf, Thomas, Parmar, Malin, Kaji, Keisuke
Опубликовано в: Cell Stem Cell (2017)

ZNF143 protein is an important regulator of the myeloid transcription factor C/EBPα

по Gonzalez, David, Luyten, Annouck, Bartholdy, Boris, Zhou, Qiling, Kardosova, Miroslava, Ebralidze, Alex, Swanson, Kenneth D., Radomska, Hanna S., Zhang, Pu, Kobayashi, Susumu S., Welner, Robert S., Levantini, Elena, Steidl, Ulrich, Chong, Gilbert, Collombet, Samuel, Choi, Min Hee, Friedman, Alan D., Scott, Linda M., Alberich-Jorda, Meritxell, Tenen, Daniel G.
Опубликовано в: J Biol Chem (2017)