Re-thinking miRNA-mRNA interactions: Intertwining issues confound target discovery

gan Cloonan, Nicole
Cyhoeddwyd yn Bioessays (2015)

Transcriptome content and dynamics at single-nucleotide resolution

gan Cloonan, Nicole, Grimmond, Sean M
Cyhoeddwyd 2008

The uniqueome: a mappability resource for short-tag sequencing

gan Koehler, Ryan, Issac, Hadar, Cloonan, Nicole, Grimmond, Sean M.
Cyhoeddwyd 2011

Transcriptome-Wide Prediction of miRNA Targets in Human and Mouse Using FASTH

gan Ragan, Chikako, Cloonan, Nicole, Grimmond, Sean M., Zuker, Michael, Ragan, Mark A.
Cyhoeddwyd 2009

Correction: Transcriptome-Wide Prediction of miRNA Targets in Human and Mouse Using FASTH

gan Ragan, Chikako, Cloonan, Nicole, Grimmond, Sean M., Zuker, Michael, Ragan, Mark A.
Cyhoeddwyd 2009

X-MATE: a flexible system for mapping short read data

gan Wood, David L. A., Xu, Qinying, Pearson, John V., Cloonan, Nicole, Grimmond, Sean M.
Cyhoeddwyd 2011

Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding sites

gan Hemberg, Martin, Gray, Jesse M., Cloonan, Nicole, Kuersten, Scott, Grimmond, Sean, Greenberg, Michael E., Kreiman, Gabriel
Cyhoeddwyd 2012

Shutdown of HIV-1 Transcription in T Cells by Nullbasic, a Mutant Tat Protein

gan Jin, Hongping, Li, Dongsheng, Sivakumaran, Haran, Lor, Mary, Rustanti, Lina, Cloonan, Nicole, Wani, Shivangi, Harrich, David
Cyhoeddwyd yn mBio (2016)

RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data

gan Cloonan, Nicole, Xu, Qinying, Faulkner, Geoffrey J., Taylor, Darrin F., Tang, Dave T. P., Kolle, Gabriel, Grimmond, Sean M.
Cyhoeddwyd 2009

Mechanically-sensitive miRNAs bias human mesenchymal stem cell fate via mTOR signalling

gan Frith, Jessica E., Kusuma, Gina D., Carthew, James, Li, Fanyi, Cloonan, Nicole, Gomez, Guillermo A., Cooper-White, Justin J.
Cyhoeddwyd yn Nat Commun (2018)

Imperfect centered miRNA binding sites are common and can mediate repression of target mRNAs

gan Martin, Hilary C, Wani, Shivangi, Steptoe, Anita L, Krishnan, Keerthana, Nones, Katia, Nourbakhsh, Ehsan, Vlassov, Alexander, Grimmond, Sean M, Cloonan, Nicole
Cyhoeddwyd 2014

The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition

gan Cloonan, Nicole, Brown, Mellissa K, Steptoe, Anita L, Wani, Shivangi, Chan, Wei Ling, Forrest, Alistair RR, Kolle, Gabriel, Gabrielli, Brian, Grimmond, Sean M
Cyhoeddwyd 2008

Unique molecular profile of exosomes derived from primary human proximal tubular epithelial cells under diseased conditions

gan Wang, Xiangju, Wilkinson, Ray, Kildey, Katrina, Potriquet, Jeremy, Mulvenna, Jason, Lobb, Richard J., Möller, Andreas, Cloonan, Nicole, Mukhopadhyay, Pamela, Kassianos, Andrew J., Healy, Helen
Cyhoeddwyd yn J Extracell Vesicles (2017)

Recommendations for Accurate Resolution of Gene and Isoform Allele-Specific Expression in RNA-Seq Data

gan Wood, David L. A., Nones, Katia, Steptoe, Anita, Christ, Angelika, Harliwong, Ivon, Newell, Felicity, Bruxner, Timothy J. C., Miller, David, Cloonan, Nicole, Grimmond, Sean M.
Cyhoeddwyd yn PLoS One (2015)

miR-139-5p is a regulator of metastatic pathways in breast cancer

gan Krishnan, Keerthana, Steptoe, Anita L., Martin, Hilary C., Pattabiraman, Diwakar R., Nones, Katia, Waddell, Nic, Mariasegaram, Mythily, Simpson, Peter T., Lakhani, Sunil R., Vlassov, Alexander, Grimmond, Sean M., Cloonan, Nicole
Cyhoeddwyd 2013

A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells

gan Tallack, Michael R., Whitington, Tom, Shan Yuen, Wai, Wainwright, Elanor N., Keys, Janelle R., Gardiner, Brooke B., Nourbakhsh, Ehsan, Cloonan, Nicole, Grimmond, Sean M., Bailey, Timothy L., Perkins, Andrew C.
Cyhoeddwyd 2010

MicroRNA-182-5p targets a network of genes involved in DNA repair

gan Krishnan, Keerthana, Steptoe, Anita L., Martin, Hilary C., Wani, Shivangi, Nones, Katia, Waddell, Nic, Mariasegaram, Mythily, Simpson, Peter T., Lakhani, Sunil R., Gabrielli, Brian, Vlassov, Alexander, Cloonan, Nicole, Grimmond, Sean M.
Cyhoeddwyd 2013

SnapShot-Seq: A Method for Extracting Genome-Wide, In Vivo mRNA Dynamics from a Single Total RNA Sample

gan Gray, Jesse M., Harmin, David A., Boswell, Sarah A., Cloonan, Nicole, Mullen, Thomas E., Ling, Joseph J., Miller, Nimrod, Kuersten, Scott, Ma, Yong-Chao, McCarroll, Steven A., Grimmond, Sean M., Springer, Michael
Cyhoeddwyd 2014

Multiple interaction nodes define the postreplication repair response to UV‐induced DNA damage that is defective in melanomas and correlated with UV signature mutation load

gan Pavey, Sandra, Pinder, Alex, Fernando, Winnie, D’Arcy, Nicholas, Matigian, Nicholas, Skalamera, Dubravka, Lê Cao, Kim‐Anh, Loo‐Oey, Dorothy, Hill, Michelle M., Stark, Mitchell, Kimlin, Michael, Burgess, Andrew, Cloonan, Nicole, Sturm, Richard A., Gabrielli, Brian
Cyhoeddwyd yn Mol Oncol (2019)

Deep-transcriptome and ribonome sequencing redefines the molecular networks of pluripotency and the extracellular space in human embryonic stem cells

gan Kolle, Gabriel, Shepherd, Jill L., Gardiner, Brooke, Kassahn, Karin S., Cloonan, Nicole, Wood, David L.A., Nourbakhsh, Ehsan, Taylor, Darrin F., Wani, Shivangi, Chy, Hun S., Zhou, Qi, McKernan, Kevin, Kuersten, Scott, Laslett, Andrew L., Grimmond, Sean M.
Cyhoeddwyd 2011