Blue Light Increases Neuronal Activity-Regulated Gene Expression in the Absence of Optogenetic Proteins

по Tyssowski, Kelsey M., Gray, Jesse M.
Опубликовано в: eNeuro (2019)

The Neuronal Stimulation-Transcription Coupling Map

по Tyssowski, Kelsey M., Gray, Jesse M.
Опубликовано в: Curr Opin Neurobiol (2019)

Enhancer RNAs: A Class of Long Noncoding RNAs Synthesized at Enhancers

по Kim, Tae-Kyung, Hemberg, Martin, Gray, Jesse M.
Опубликовано в: Cold Spring Harb Perspect Biol (2015)

Recent advances in functional assays of transcriptional enhancers

по Babbitt, Courtney C., Markstein, Michele, Gray, Jesse M.
Опубликовано в: Genomics (2015)

RNA sequencing from neural ensembles activated during fear conditioning in the mouse temporal association cortex

по Cho, Jin-Hyung, Huang, Ben S., Gray, Jesse M.
Опубликовано в: Sci Rep (2016)

A circuit for navigation in Caenorhabditis elegans

по Gray, Jesse M., Hill, Joseph J., Bargmann, Cornelia I.
Опубликовано 2005

Brain-wide maps of Fos expression during fear learning and recall

по Cho, Jin-Hyung, Rendall, Sam D., Gray, Jesse M.
Опубликовано в: Learn Mem (2017)

MPRAnator: a web-based tool for the design of massively parallel reporter assay experiments

по Georgakopoulos-Soares, Ilias, Jain, Naman, Gray, Jesse M, Hemberg, Martin
Опубликовано в: Bioinformatics (2017)

Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding sites

по Hemberg, Martin, Gray, Jesse M., Cloonan, Nicole, Kuersten, Scott, Grimmond, Sean, Greenberg, Michael E., Kreiman, Gabriel
Опубликовано 2012

Genomic Views of Transcriptional Enhancers: Essential Determinants of Cellular Identity and Activity-Dependent Responses in the CNS

по Gray, Jesse M., Kim, Tae-Kyung, West, Anne E., Nord, Alex S., Markenscoff-Papadimitriou, Eirene, Lomvardas, Stavros
Опубликовано в: J Neurosci (2015)

Total RNA-seq to identify pharmacological effects on specific stages of mRNA synthesis

по Boswell, Sarah A, Snavely, Andrew, Landry, Heather M, Churchman, L Stirling, Gray, Jesse M, Springer, Michael
Опубликовано в: Nat Chem Biol (2017)

Firing Rate Homeostasis Can Occur in the Absence of Neuronal Activity-Regulated Transcription

по Tyssowski, Kelsey M., Letai, Katherine C., Rendall, Samuel D., Tan, Chao, Nizhnik, Anastasia, Kaeser, Pascal S., Gray, Jesse M.
Опубликовано в: J Neurosci (2019)

High-throughput functional comparison of promoter and enhancer activities

по Nguyen, Thomas A., Jones, Richard D., Snavely, Andrew R., Pfenning, Andreas R., Kirchner, Rory, Hemberg, Martin, Gray, Jesse M.
Опубликовано в: Genome Res (2016)

Expression divergence measured by transcriptome sequencing of four yeast species

по Busby, Michele A, Gray, Jesse M, Costa, Allen M, Stewart, Chip, Stromberg, Michael P, Barnett, Derek, Chuang, Jeffrey H, Springer, Michael, Marth, Gabor T
Опубликовано 2011

Genome-wide analysis of MEF2 transcriptional program reveals synaptic target genes and neuronal activity-dependent polyadenylation site selection

по Flavell, Steven W., Kim, Tae-Kyung, Gray, Jesse M., Harmin, David A., Hemberg, Martin, Hong, Elizabeth J., Markenscoff-Papadimitriou, Eirene, Bear, Daniel M., Greenberg, Michael E.
Опубликовано 2008

Neurons Detect Increases and Decreases in Oxygen Levels Using Distinct Guanylate Cyclases

по Zimmer, Manuel, Gray, Jesse M., Pokala, Navin, Chang, Andy J., Karow, David S., Marletta, Michael. A., Hudson, Martin L., Morton, David B., Chronis, Nikos, Bargmann, Cornelia I.
Опубликовано 2009

SnapShot-Seq: A Method for Extracting Genome-Wide, In Vivo mRNA Dynamics from a Single Total RNA Sample

по Gray, Jesse M., Harmin, David A., Boswell, Sarah A., Cloonan, Nicole, Mullen, Thomas E., Ling, Joseph J., Miller, Nimrod, Kuersten, Scott, Ma, Yong-Chao, McCarroll, Steven A., Grimmond, Sean M., Springer, Michael
Опубликовано 2014

A Circuit Mechanism for Differentiating Positive and Negative Associations

по Namburi, Praneeth, Beyeler, Anna, Yorozu, Suzuko, Calhoon, Gwendolyn G., Halbert, Sarah A., Wichmann, Romy, Holden, Stephanie S., Mertens, Kim L., Anahtar, Melodi, Felix-Ortiz, Ada C., Wickersham, Ian R., Gray, Jesse M., Tye, Kay M.
Опубликовано в: Nature (2015)

Widespread transcription at neuronal activity-regulated enhancers

по Kim, Tae-Kyung, Hemberg, Martin, Gray, Jesse M., Costa, Allen M., Bear, Daniel M., Wu, Jing, Harmin, David A., Laptewicz, Mike, Barbara-Haley, Kellie, Kuersten, Scott, Markenscoff-Papadimitriou, Eirene, Kuhl, Dietmar, Bito, Haruhiko, Worley, Paul F., Kreiman, Gabriel, Greenberg, Michael E.
Опубликовано 2010

Different neuronal activity patterns induce different gene expression programs

по Tyssowski, Kelsey M., DeStefino, Nicholas R., Cho, Jin-Hyung, Dunn, Carissa J., Poston, Robert G., Carty, Crista E., Jones, Richard D., Chang, Sarah M., Romeo, Palmyra, Wurzelmann, Mary K., Ward, James M., Andermann, Mark L., Saha, Ramendra N., Dudek, Serena M., Gray, Jesse M.
Опубликовано в: Neuron (2018)