Generation of random mutant libraries with multiple primers in a single reaction

od Lu, Xiaozhi, Hora, Bhavna, Cai, Fangping, Gao, Feng
Wydane 2010

Transmission of Multiple HIV-1 Subtype C Transmitted/founder Viruses into the Same Recipients Was not Determined by Modest Phenotypic Differences

od Song, Hongshuo, Hora, Bhavna, Giorgi, Elena E., Kumar, Amit, Cai, Fangping, Bhattacharya, Tanmoy, Perelson, Alan S., Gao, Feng
Wydane w Sci Rep (2016)

Simultaneous Detection of Major Drug Resistance Mutations of HIV-1 Subtype B Viruses from Dried Blood Spot Specimens by Multiplex Allele-Specific Assay

od Zhang, Guoqing, Cai, Fangping, de Rivera, Ivette Lorenzana, Zhou, Zhiyong, Zhang, Jing, Nkengasong, John, Gao, Feng, Yang, Chunfu
Wydane w J Clin Microbiol (2015)

Evolution of Drug-Resistant Viral Populations during Interruption of Antiretroviral Therapy

od Wang, Dongning, Hicks, Charles B., Goswami, Neela D., Tafoya, Emi, Ribeiro, Ruy M., Cai, Fangping, Perelson, Alan S., Gao, Feng
Wydane 2011

Analysis of Low-Frequency Mutations Associated with Drug Resistance to Raltegravir before Antiretroviral Treatment

od Liu, Jia, Miller, Michael D., Danovich, Robert M., Vandergrift, Nathan, Cai, Fangping, Hicks, Charles B., Hazuda, Daria J., Gao, Feng
Wydane 2011

Clonal amplification and maternal-infant transmission of nevirapine-resistant HIV-1 variants in breast milk following single-dose nevirapine prophylaxis

od Permar, Sallie R, Salazar, Maria G, Gao, Feng, Cai, Fangping, Learn, Gerald H, Kalilani, Linda, Hahn, Beatrice H, Shaw, George M, Salazar-Gonzalez, Jesus F
Wydane 2013

Accumulated mutations by 6 months of infection collectively render transmitted/founder HIV-1 significantly less fit

od Wang, Chu, Liu, Donglai, Zuo, Tao, Hora, Bhavna, Cai, Fangping, Ding, Haitao, Kappes, John, Ochsenbauer, Christina, Kong, Wei, Yu, Xianghui, Bhattacharya, Tanmoy, Perelson, Alan S, Gao, Feng
Wydane w J Infect (2019)

Recombination-mediated escape from primary CD8+ T cells in acute HIV-1 infection

od Ritchie, Adam John, Cai, Fangping, Smith, Nicola MG, Chen, Sheri, Song, Hongshuo, Brackenridge, Simon, Abdool Karim, Salim S, Korber, Bette T, McMichael, Andrew J, Gao, Feng, Goonetilleke, Nilu
Wydane 2014

Comprehensive Characterization of the Transmitted/founder env Genes from a Single MSM Cohort in China

od Chen, Yue, Li, Ning, Zhang, Tong, Huang, Xiaojie, Cai, Fangping, Vandergrift, Nathan, Xin, Ruolei, Meng, Zhefeng, Zhang, Xiaoyan, Jiang, Chunlai, Xu, Xiaoning, Montefiori, David C, Gao, Feng, Wu, Hao
Wydane w J Acquir Immune Defic Syndr (2015)

Streamlined Subpopulation, Subtype, and Recombination Analysis of HIV-1 Half-Genome Sequences Generated by High-Throughput Sequencing

od Hora, Bhavna, Gulzar, Naila, Chen, Yue, Karagiannis, Konstantinos, Cai, Fangping, Su, Chang, Smith, Krista, Simonyan, Vahan, Shah, Sharaf Ali, Ahmed, Manzoor, Sanchez, Ana M., Stone, Mars, Cohen, Myron S., Denny, Thomas N., Mazumder, Raja, Gao, Feng
Wydane w mSphere (2020)

HIV Resistance and Prevention of Mother-to-Child Transmission Regimen in HIV-Infected Infants in Northern Tanzania

od Dow, Dorothy E., Schimana, Werner, Nyombi, Balthazar M., Mmbaga, Blandina T., Shayo, Aisa M., Bartlett, John A., Massambu, Charles G., Kifaro, Emmanuel G., Turner, Elizabeth L., DeMarco, Todd, Cai, Fangping, Cunningham, Coleen K., Buchanan, Ann M.
Wydane w AIDS Res Hum Retroviruses (2017)

Simultaneous Detection of Major Drug Resistance Mutations in the Protease and Reverse Transcriptase Genes for HIV-1 Subtype C by Use of a Multiplex Allele-Specific Assay

od Zhang, Guoqing, Cai, Fangping, Zhou, Zhiyong, DeVos, Joshua, Wagar, Nick, Diallo, Karidia, Zulu, Isaac, Wadonda-Kabondo, Nellie, Stringer, Jeffrey S. A., Weidle, Paul J., Ndongmo, Clement B., Sikazwe, Izukanji, Sarr, Abdoulaye, Kagoli, Matthew, Nkengasong, John, Gao, Feng, Yang, Chunfu
Wydane 2013

Cooperation between somatic mutation and germline-encoded residues enables antibody recognition of HIV-1 envelope glycans

od Wu, Nelson R., Nicely, Nathan I., Lee, Esther M., Reed, Rachel K., Watts, Brian E., Cai, Fangping, Walkowicz, William E., Aussedat, Baptiste, Jones, Julia A., Eaton, Amanda, Trama, Ashley M., Alam, S. Munir, Montefiori, David C., Haynes, Barton F., Saunders, Kevin O.
Wydane w PLoS Pathog (2019)

Impact of immune escape mutations on HIV-1 fitness in the context of the cognate transmitted/founder genome

od Song, Hongshuo, Pavlicek, Jeffrey W, Cai, Fangping, Bhattacharya, Tanmoy, Li, Hui, Iyer, Shilpa S, Bar, Katharine J, Decker, Julie M, Goonetilleke, Nilu, Liu, Michael KP, Berg, Anna, Hora, Bhavna, Drinker, Mark S, Eudailey, Josh, Pickeral, Joy, Moody, M Anthony, Ferrari, Guido, McMichael, Andrew, Perelson, Alan S, Shaw, George M, Hahn, Beatrice H, Haynes, Barton F, Gao, Feng
Wydane 2012

Postnatally-transmitted HIV-1 Envelope variants have similar neutralization-sensitivity and function to that of nontransmitted breast milk variants

od Fouda, Genevieve G, Mahlokozera, Tatenda, Salazar-Gonzalez, Jesus F, Salazar, Maria G, Learn, Gerald, Kumar, Surender B, Dennison, S Moses, Russell, Elizabeth, Rizzolo, Katherine, Jaeger, Frederick, Cai, Fangping, Vandergrift, Nathan A, Gao, Feng, Hahn, Beatrice, Shaw, George M, Ochsenbauer, Christina, Swanstrom, Ronald, Meshnick, Steve, Mwapasa, Victor, Kalilani, Linda, Fiscus, Susan, Montefiori, David, Haynes, Barton, Kwiek, Jesse, Alam, S Munir, Permar, Sallie R
Wydane 2013

Completeness of HIV-1 Envelope Glycan Shield at Transmission Determines Neutralization Breadth

od Wagh, Kshitij, Kreider, Edward F., Li, Yingying, Barbian, Hannah J., Learn, Gerald H., Giorgi, Elena, Hraber, Peter T., Decker, Timothy G., Smith, Andrew G., Gondim, Marcos V., Gillis, Lindsey, Wandzilak, Jamie, Chuang, Gwo-Yu, Rawi, Reda, Cai, Fangping, Pellegrino, Pierre, Williams, Ian, Overbaugh, Julie, Gao, Feng, Kwong, Peter D., Haynes, Barton F., Shaw, George M., Borrow, Persephone, Seaman, Michael S., Hahn, Beatrice H., Korber, Bette
Wydane w Cell Rep (2018)

Cooperation of B Cell Lineages in Induction of HIV-1-Broadly Neutralizing Antibodies

od Gao, Feng, Bonsignori, Mattia, Liao, Hua-Xin, Kumar, Amit, Xia, Shi-Mao, Lu, Xiaozhi, Cai, Fangping, Hwang, Kwan-Ki, Song, Hongshuo, Zhou, Tongqing, Lynch, Rebecca M., Alam, S. Munir, Moody, M. Anthony, Ferrari, Guido, Berrong, Mark, Kelsoe, Garnett, Shaw, George M., Hahn, Beatrice H., Montefiori, David C., Kamanga, Gift, Cohen, Myron, Hraber, Peter, Kwong, Peter D., Korber, Bette T., Mascola, John R., Kepler, Thomas B., Haynes, Barton F.
Wydane 2014

Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection

od Song, Hongshuo, Giorgi, Elena E., Ganusov, Vitaly V., Cai, Fangping, Athreya, Gayathri, Yoon, Hyejin, Carja, Oana, Hora, Bhavna, Hraber, Peter, Romero-Severson, Ethan, Jiang, Chunlai, Li, Xiaojun, Wang, Shuyi, Li, Hui, Salazar-Gonzalez, Jesus F., Salazar, Maria G., Goonetilleke, Nilu, Keele, Brandon F., Montefiori, David C., Cohen, Myron S., Shaw, George M., Hahn, Beatrice H., McMichael, Andrew J., Haynes, Barton F., Korber, Bette, Bhattacharya, Tanmoy, Gao, Feng
Wydane w Nat Commun (2018)

Structural and genetic convergence of HIV-1 neutralizing antibodies in vaccinated non-human primates

od Cai, Fangping, Chen, Wei-Hung, Wu, Weimin, Jones, Julia A., Choe, Misook, Gohain, Neelakshi, Shen, Xiaoying, LaBranche, Celia, Eaton, Amanda, Sutherland, Laura, Lee, Esther M., Hernandez, Giovanna E., Wu, Nelson R., Scearce, Richard, Seaman, Michael S., Moody, M. Anthony, Santra, Sampa, Wiehe, Kevin, Tomaras, Georgia D., Wagh, Kshitij, Korber, Bette, Bonsignori, Mattia, Montefiori, David C., Haynes, Barton F., de Val, Natalia, Joyce, M. Gordon, Saunders, Kevin O.
Wydane w PLoS Pathog (2021)

Vertical T cell immunodominance and epitope entropy determine HIV-1 escape

od Liu, Michael K.P., Hawkins, Natalie, Ritchie, Adam J., Ganusov, Vitaly V., Whale, Victoria, Brackenridge, Simon, Li, Hui, Pavlicek, Jeffrey W., Cai, Fangping, Rose-Abrahams, Melissa, Treurnicht, Florette, Hraber, Peter, Riou, Catherine, Gray, Clive, Ferrari, Guido, Tanner, Rachel, Ping, Li-Hua, Anderson, Jeffrey A., Swanstrom, Ronald, B, CHAVI Core, Cohen, Myron, Karim, Salim S. Abdool, Haynes, Barton, Borrow, Persephone, Perelson, Alan S., Shaw, George M., Hahn, Beatrice H., Williamson, Carolyn, Korber, Bette T., Gao, Feng, Self, Steve, McMichael, Andrew, Goonetilleke, Nilu
Wydane 2012